Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g120690.2.1 | Tomato | cytosol | 98.94 | 98.94 |
| PGSC0003DMT400019607 | Potato | cytosol | 87.23 | 87.23 |
| VIT_09s0002g04280.t01 | Wine grape | cytosol | 84.04 | 83.16 |
| KRH09878 | Soybean | cytosol | 80.85 | 80.0 |
| KRH23441 | Soybean | cytosol | 79.79 | 78.95 |
| GSMUA_Achr2P19900_001 | Banana | cytosol | 77.66 | 78.49 |
| AT3G16120.1 | Thale cress | cytosol | 74.47 | 75.27 |
| CDY02551 | Canola | cytosol | 74.47 | 74.47 |
| AT1G52245.1 | Thale cress | cytosol | 74.47 | 74.47 |
| Bra014318.1-P | Field mustard | cytosol | 74.47 | 74.47 |
| Bra027190.1-P | Field mustard | cytosol | 73.4 | 74.19 |
| CDX97722 | Canola | cytosol | 73.4 | 74.19 |
| GSMUA_Achr10P... | Banana | cytosol | 73.4 | 74.19 |
| Bra018957.1-P | Field mustard | cytosol | 73.4 | 73.4 |
| CDY30135 | Canola | cytosol | 72.34 | 73.12 |
| GSMUA_Achr7P14400_001 | Banana | cytosol | 71.28 | 72.04 |
| KXG33416 | Sorghum | cytosol | 71.28 | 72.04 |
| Zm00001d043386_P001 | Maize | cytosol | 70.21 | 70.97 |
| GSMUA_Achr7P25190_001 | Banana | cytosol | 70.21 | 70.97 |
| GSMUA_Achr10P... | Banana | cytosol | 71.28 | 65.69 |
| TraesCS3D01G296300.1 | Wheat | cytosol | 69.15 | 65.66 |
| TraesCS3B01G330900.1 | Wheat | cytosol | 68.09 | 64.65 |
| TraesCS3A01G305600.1 | Wheat | cytosol | 68.09 | 64.65 |
| TraesCS1D01G203800.1 | Wheat | cytosol | 67.02 | 63.64 |
| EES06648 | Sorghum | cytosol | 65.96 | 62.63 |
| Os02t0269200-01 | Rice | cytosol | 65.96 | 62.63 |
| TraesCS2B01G143000.1 | Wheat | cytosol | 64.89 | 61.62 |
| TraesCS2A01G245600.1 | Wheat | cytosol | 64.89 | 61.62 |
| TraesCS1B01G110900.1 | Wheat | cytosol | 64.89 | 61.62 |
| HORVU3Hr1G073190.1 | Barley | cytosol | 68.09 | 61.54 |
| TraesCS5B01G340700.1 | Wheat | cytosol | 63.83 | 60.61 |
| TraesCS7A01G061500.1 | Wheat | cytosol | 67.02 | 60.0 |
| TraesCS2B01G427400.1 | Wheat | cytosol | 62.77 | 59.6 |
| TraesCS7D01G056400.1 | Wheat | cytosol | 65.96 | 59.05 |
| TraesCS4A01G427300.1 | Wheat | cytosol | 64.89 | 58.1 |
| TraesCS7A01G284100.1 | Wheat | cytosol, plastid | 52.13 | 56.32 |
| Zm00001d016016_P001 | Maize | cytosol | 62.77 | 49.17 |
| CDY47528 | Canola | cytosol | 67.02 | 48.46 |
| TraesCS4A01G428300.1 | Wheat | cytosol | 64.89 | 45.52 |
| PGSC0003DMT400049549 | Potato | cytosol | 52.13 | 40.5 |
| HORVU7Hr1G011400.2 | Barley | plastid | 63.83 | 37.04 |
| PGSC0003DMT400029467 | Potato | extracellular | 36.17 | 28.57 |
| PGSC0003DMT400032411 | Potato | cytosol, mitochondrion, nucleus, plastid | 42.55 | 27.21 |
| PGSC0003DMT400081918 | Potato | cytosol | 35.11 | 25.38 |
| PGSC0003DMT400053284 | Potato | cytosol | 41.49 | 16.88 |
| PGSC0003DMT400062841 | Potato | plastid | 39.36 | 13.55 |
| PGSC0003DMT400083122 | Potato | cytosol | 38.3 | 13.19 |
Protein Annotations
| EntrezGene:102589624 | Gene3D:3.30.740.10 | MapMan:35.2 | InterPro:DLC_sf | InterPro:Dynein_light_chain_typ-1/2 | GO:GO:0003674 |
| GO:GO:0003774 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0030286 | InterPro:IPR037177 | UniProt:M0ZRI6 | PFAM:PF01221 | EnsemblPlantsGene:PGSC0003DMG400002545 | PGSC:PGSC0003DMG400002545 |
| EnsemblPlants:PGSC0003DMT400006527 | PANTHER:PTHR11886 | PANTHER:PTHR11886:SF47 | SMART:SM01375 | SUPFAM:SSF54648 | UniParc:UPI000296EB5C |
| RefSeq:XP_006343074.1 | : | : | : | : | : |
Description
Cytoplasmic dynein light chain [Source:PGSC_GENE;Acc:PGSC0003DMG400002545]
Coordinates
chr3:-:60045020..60046735
Molecular Weight (calculated)
10695.0 Da
IEP (calculated)
8.705
GRAVY (calculated)
-0.031
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MLEGKGVIED TDMPVKMQIQ AMRWASQALD VYDVLHYRSI AAHIKKEFDK KYGGGWQCVV GSKFGCFFTH TKGTFIYFTL ETLNFLIFKG ATST
1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP
Arabidopsis Description
At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.