Factsheet for GSMUA_Achr10P14830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P04520_001
GSMUA_Achr2P13770_001
GSMUA_Achr3P05620_001
GSMUA_Achr3P05640_001
GSMUA_Achr4P33120_001
GSMUA_Achr5P07300_001
GSMUA_Achr6P00160_001
GSMUA_Achr7P15940_001
GSMUA_Achr8P09820_001
GSMUA_Achr9P13850_001
GSMUA_Achr9P13870_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16120.1	GSMUA_Achr3P05640_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr7P15940_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr9P13850_001	AT2G24550.1	21798944
AT3G16120.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT3G16120.1	GSMUA_Achr10P...	AT3G53320.1	21798944
AT3G16120.1	GSMUA_Achr5P07300_001	AT3G53320.1	21798944
AT3G16120.1	GSMUA_Achr2P13770_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr4P33120_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr6P00160_001	AT3G57540.1	21798944
AT3G16120.1	GSMUA_Achr8P09820_001	AT5G14910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P19900_001	Banana	cytosol	77.45	84.95
GSMUA_Achr10P...	Banana	cytosol	74.51	81.72
KRH23441	Soybean	cytosol	71.57	76.84
Solyc12g044240.1.1	Tomato	cytosol	70.59	76.6
GSMUA_Achr7P25190_001	Banana	cytosol	69.61	76.34
GSMUA_Achr7P14400_001	Banana	cytosol	69.61	76.34
KRH09878	Soybean	cytosol	70.59	75.79
PGSC0003DMT400019607	Potato	cytosol	69.61	75.53
VIT_09s0002g04280.t01	Wine grape	cytosol	67.65	72.63
CDY02551	Canola	cytosol	66.67	72.34
Solyc03g120690.2.1	Tomato	cytosol	66.67	72.34
Bra014318.1-P	Field mustard	cytosol	66.67	72.34
AT1G52245.1	Thale cress	cytosol	66.67	72.34
PGSC0003DMT400006527	Potato	cytosol	65.69	71.28
CDX97722	Canola	cytosol	64.71	70.97
Bra027190.1-P	Field mustard	cytosol	64.71	70.97
Bra018957.1-P	Field mustard	cytosol	64.71	70.21
AT3G16120.1	Thale cress	cytosol	63.73	69.89
CDY30135	Canola	cytosol	63.73	69.89
KRH60274	Soybean	cytosol	61.76	67.74
KRH41561	Soybean	cytosol	60.78	66.67
VIT_11s0016g03770.t01	Wine grape	cytosol	62.75	66.67
CDY47528	Canola	cytosol	62.75	49.23
GSMUA_Achr2P14130_001	Banana	cytosol	50.98	47.71
GSMUA_Achr8P30040_001	Banana	cytosol	30.39	40.26
GSMUA_Achr11P...	Banana	cytosol	30.39	40.26
GSMUA_Achr9P29930_001	Banana	cytosol	43.14	39.29
GSMUA_AchrUn_...	Banana	cytosol	26.47	30.34
GSMUA_Achr1P20660_001	Banana	cytosol	38.24	28.68
GSMUA_Achr3P22950_001	Banana	cytosol, mitochondrion	39.22	28.37
GSMUA_Achr7P12500_001	Banana	cytosol	32.35	22.76
GSMUA_Achr9P27210_001	Banana	nucleus	31.37	21.05

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	InterPro:DLC_sf	InterPro:Dynein_light_chain_typ-1/2	GO:GO:0003674	GO:GO:0003774
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	GO:GO:0030286
EnsemblPlantsGene:GSMUA_Achr10G14830_001	EnsemblPlants:GSMUA_Achr10P14830_001	EnsemblPlants:GSMUA_Achr10T14830_001	InterPro:IPR037177	UniProt:M0RIA9	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF47	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI00029506CC	:

Description

Putative Dynein light chain LC6, flagellar outer arm [Source:GMGC_GENE;Acc:GSMUA_Achr10G14830_001]

Coordinates

chr10:+:22955445..22956136

Molecular Weight (calculated)

11455.0 Da

IEP (calculated)

7.244

GRAVY (calculated)

0.175

Length

102 amino acids

Sequence
(BLAST)

001: MLEGRAIIQD TDMPVKMQLQ AMSCAYEALD LFDVLDCTGI AAHIIKEFDV RYGPGWQCVV GSKFGCFFTH RKGTFVYFCL ERLNFLIFKG PSAMSTPTTN
101: AK

Best Arabidopsis Sequence Match ( AT1G52245.1 )
(BLAST)

1: MLEGKAMVED SDMPVKMQMQ AMAFASQALD LFDVFDCKSI AGHIKKEFDE RYGSGWQCVV GSNFGCFFTH SKGTFIYFQL ETLKFLIFKG ASTP

Arabidopsis Description

At1g52250 [Source:UniProtKB/TrEMBL;Acc:Q9M810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.