Factsheet for GSMUA_Achr9P13870_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P14370_001
GSMUA_Achr1P28110_001
GSMUA_Achr2P04520_001
GSMUA_Achr3P05620_001
GSMUA_Achr5P28120_001
GSMUA_Achr6P35730_001
GSMUA_Achr7P14640_001
GSMUA_Achr8P05350_001
GSMUA_Achr8P26280_001
GSMUA_Achr9P13870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	GSMUA_Achr10P...	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr1P14370_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr1P28110_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr6P35730_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr7P14640_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr8P05350_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr8P26280_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_AchrUn_...	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr10P...	AT2G02560.1	21798944
AT1G51600.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr5P28120_001	AT5G58575.1	21798944
AT3G21175.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05620_001	Banana	nucleus	57.43	69.6
GSMUA_Achr2P04520_001	Banana	nucleus	33.0	61.73
Os02t0148500-01	Rice	nucleus	51.49	47.56
Bra014292.1-P	Field mustard	nucleus	39.93	46.54
CDY46552	Canola	nucleus	39.6	45.98
GSMUA_Achr7P01650_001	Banana	nucleus	35.97	44.67
GSMUA_Achr10P...	Banana	nucleus	47.85	44.62
VIT_09s0054g00440.t01	Wine grape	nucleus	43.89	44.48
AT3G21175.1	Thale cress	nucleus	43.56	44.44
CDY50073	Canola	nucleus	41.25	43.4
AT1G51600.1	Thale cress	nucleus	43.23	43.38
EER88899	Sorghum	nucleus	49.84	42.9
CDY52949	Canola	nucleus	40.59	41.55
CDY19576	Canola	nucleus	40.92	41.47
Zm00001d014656_P003	Maize	nucleus	48.18	40.78
TraesCS7D01G416000.2	Wheat	nucleus	52.48	40.77
TraesCS6D01G108700.2	Wheat	nucleus	45.54	40.35
TraesCS6B01G146800.2	Wheat	nucleus	45.54	40.35
TraesCS7B01G323600.1	Wheat	nucleus	51.82	40.26
TraesCS7A01G423100.2	Wheat	nucleus	52.15	39.8
TraesCS6A01G118800.2	Wheat	nucleus	44.55	39.59
Zm00001d036494_P001	Maize	nucleus	46.53	39.39
KRH44616	Soybean	extracellular, vacuole	43.23	39.22
Bra031258.1-P	Field mustard	nucleus	40.59	38.32
HORVU6Hr1G021570.1	Barley	nucleus	42.24	37.98
GSMUA_Achr10P...	Banana	nucleus	32.34	36.7
Bra023900.1-P	Field mustard	nucleus	42.57	35.54
CDY37312	Canola	cytosol, nucleus, plastid	42.24	34.88
CDY27538	Canola	nucleus	42.57	33.42
HORVU7Hr1G097840.6	Barley	nucleus	51.16	33.12
GSMUA_Achr7P08720_001	Banana	cytosol	13.86	25.77

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr9G13870_001	EnsemblPlants:GSMUA_Achr9P13870_001
EnsemblPlants:GSMUA_Achr9T13870_001	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M0U045
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI0002950D61	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G13870_001]

Coordinates

chr9:-:8993142..8996097

Molecular Weight (calculated)

32486.1 Da

IEP (calculated)

7.574

GRAVY (calculated)

-0.651

Length

303 amino acids

Sequence
(BLAST)

001: MSGKPGQTAE LRTAGFVRQP GVAEGHMIAE ADARAMQTYG NDRDNNGGGD GVDEDFDGAV EGEGMEGDAL PDHGGLGDPH AVVVPPVTSN QLTLSFQGEV
101: YVFDSVSPEK VQAVLLLLGG REIATNPASI VSASNPLNKR LNFPHRVASL MRFREKRKER NFDKKIRYAV RKEVALRMQR NRGQFTSSKS KPEDATSSVT
201: NCEGIQRWGS IEGRPPSAAV CHHCGISSKS TPMMRRGPEG PRTLCNACGL MWANKGTLRD LSKNPSLLTH NGPSEGNEVN GASAPVAEHQ PPNTANDRDT
301: ASS

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.