Factsheet for GSMUA_Achr7P01650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05620_001	Banana	nucleus	44.26	43.2
EER91071	Sorghum	nucleus	53.28	42.9
Zm00001d033523_P001	Maize	nucleus	50.41	42.71
GSMUA_Achr2P04520_001	Banana	nucleus	28.28	42.59
Os03t0684000-01	Rice	nucleus	53.69	41.07
HORVU4Hr1G004080.9	Barley	nucleus	52.46	39.75
TraesCS4A01G285900.2	Wheat	nucleus	51.64	39.5
GSMUA_Achr9P13870_001	Banana	nucleus	44.67	35.97
GSMUA_Achr10P...	Banana	nucleus	36.48	33.33
GSMUA_Achr10P...	Banana	nucleus	43.44	32.62
PGSC0003DMT400024207	Potato	nucleus	43.03	29.75
KRH62255	Soybean	nucleus	42.21	29.43
VIT_18s0001g07730.t01	Wine grape	nucleus	44.26	29.35
KRH52968	Soybean	nucleus	42.21	29.34
KRH42075	Soybean	nucleus	42.21	28.77
KRH49841	Soybean	nucleus	41.39	28.45
VIT_03s0038g00580.t01	Wine grape	cytosol	19.67	27.12
PGSC0003DMT400027729	Potato	nucleus	40.98	26.67
Solyc01g106040.2.1	Tomato	nucleus	39.75	25.66
GSMUA_Achr7P08720_001	Banana	cytosol	14.34	21.47
Solyc04g076530.2.1	Tomato	nucleus	41.39	15.98

Protein Annotations

MapMan:15.5.1.3	MapMan:15.5.45	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr7G01650_001	EnsemblPlants:GSMUA_Achr7P01650_001
EnsemblPlants:GSMUA_Achr7T01650_001	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M0TDV5
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom
UniParc:UPI000296E526	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:	:

Description

GATA transcription factor 25, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G01650_001]

Coordinates

chr7:-:1297322..1306401

Molecular Weight (calculated)

26765.8 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.589

Length

244 amino acids

Sequence
(BLAST)

001: MTSNQLTLLY QGEVYVFDSV TPEKVQAVLL LLGGCEVPSS ISSTTLPDAQ DEKGYDDILR RANIPAKRIA SLIRFREKRK ERNFDKKIRY NVRKEVALRM
101: QRRKGQFAGK ASLQEGATAS SSCDPVQDAT LEDPPRESKC QNCGISEKMT PAMRRGPAGP RSLCNACGLM WANKGTLRSP FKAKSVAPSL ANSSDHGEVI
201: VSELGSDNKS IEHAPNNHEA VATSQIAKEG MQTDVQLTEV ERQA

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.