Factsheet for Solyc01g106040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027729	Potato	nucleus	86.24	86.93
KRH49841	Soybean	nucleus	40.21	42.82
KRH42075	Soybean	nucleus	40.48	42.74
GSMUA_Achr7P01650_001	Banana	nucleus	25.66	39.75
Solyc10g047640.1.1	Tomato	nucleus	28.84	35.05
EER91071	Sorghum	nucleus	27.25	33.99
Zm00001d013331_P001	Maize	nucleus	24.87	33.81
EER90915	Sorghum	nucleus	24.6	33.7
VIT_03s0038g00580.t01	Wine grape	cytosol	15.61	33.33
Solyc01g106030.2.1	Tomato	nucleus	28.31	32.82
TraesCS4A01G249400.1	Wheat	nucleus	23.02	32.22
TraesCS4B01G065300.1	Wheat	nucleus	22.75	31.97
Os03t0684000-01	Rice	nucleus	26.45	31.35
TraesCS4A01G285900.2	Wheat	nucleus	26.19	31.03
Os03t0734900-00	Rice	nucleus	22.22	31.0
Zm00001d033523_P001	Maize	nucleus	23.28	30.56
HORVU4Hr1G004080.9	Barley	nucleus	25.4	29.81
TraesCS4D01G064200.1	Wheat	nucleus	24.34	29.68
HORVU4Hr1G010840.15	Barley	nucleus	22.75	28.76
Solyc04g076530.2.1	Tomato	nucleus	34.92	20.89

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:K4B2H3	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF235	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc01g106040.2
EnsemblPlants:Solyc01g106040.2.1	InterPro:Tify_dom	UniParc:UPI000276752A	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:

Description

No Description!

Coordinates

chr1:+:94016130..94021123

Molecular Weight (calculated)

41207.1 Da

IEP (calculated)

4.845

GRAVY (calculated)

-0.566

Length

378 amino acids

Sequence
(BLAST)

001: MEAADNSRKM VGGQYGVVAF QQEYVNVPIR VDRYGGGGFE AHDISVGGGY EEAMSSGEEL QVCSMPLVAG PVDSGRVMAV SSRTSELTIS FEGQVYVFPA
101: VTPEKVQAVM LLLGGCDVPS YVPNSNSVAL PSTKSVENDV PTRQNISPRM ASLIRFREKR KDRCFEKTIR YACRKEVAQR MHRKNGQFAS LKEGGKSSAD
201: NIDSGDSAAQ SEPTLRRCHH CGTNESETPA MRRGPSGPRT LCNACGLMWA NKGMFRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK QHQEGSSGET
301: KLTEENPSVT TAELDMQEAA ENFADSSPFR IRSSSVNIDD EDNLDELANA SGTEFEIPAD FDEQIGIDSH MSVHWPVT

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.