Factsheet for Os03t0734900-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G065300.1	Wheat	nucleus	74.54	75.09
TraesCS4A01G249400.1	Wheat	nucleus	73.8	74.07
Zm00001d013331_P001	Maize	nucleus	68.63	66.91
HORVU4Hr1G010840.15	Barley	nucleus	70.85	64.21
EER90915	Sorghum	nucleus	64.58	63.41
TraesCS4D01G064200.1	Wheat	nucleus	67.53	59.03
Os03t0684000-01	Rice	nucleus	43.17	36.68
Os02t0148500-01	Rice	nucleus	37.27	30.79
VIT_18s0001g07730.t01	Wine grape	nucleus	40.96	30.16
KRH62255	Soybean	nucleus	38.75	30.0
KRH52968	Soybean	nucleus	38.75	29.91
PGSC0003DMT400024207	Potato	nucleus	38.38	29.46
KRH42075	Soybean	nucleus	35.79	27.09
KRH49841	Soybean	nucleus	34.69	26.48
VIT_03s0038g00580.t01	Wine grape	cytosol	15.5	23.73
Solyc01g106040.2.1	Tomato	nucleus	31.0	22.22
PGSC0003DMT400027729	Potato	nucleus	30.63	22.13
Solyc04g076530.2.1	Tomato	nucleus	38.75	16.61

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:4334019	ProteinID:AAT78796.1	ProteinID:ABF98730.1	ProteinID:BAF13097.2
ProteinID:BAS86249.1	InterPro:CCT_domain	ProteinID:EEE59877.1	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006366	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0030154	GO:GO:0036459
GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	EnsemblPlantsGene:Os03g0734900	EnsemblPlants:Os03t0734900-00	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203
ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF277	UniProt:Q0DNU1
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI00019338B6	RefSeq:XP_015632019.1
RefSeq:XP_015632020.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

GATA TRANSCRIPTION FACTOR 19Similar to CCT motif family protein, expressed. (Os03t0734900-00)

Coordinates

chr3:-:30094435..30099093

Molecular Weight (calculated)

29029.3 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.588

Length

271 amino acids

Sequence
(BLAST)

001: MAAEPPADGR DPPADDGAAG DGAVESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVQ AVLLVLGGSD MPPGLVSMAV PTTFDEKSTT VAARRVASLM
101: RFREKRKERC FDKKIRYSVR KEVAQKMKRR KGQFAGRADF GDGSCSSAPC GSTANGEDDH IRETHCQNCG ISSRLTPAMR RGPAGPRSLC NACGLMWANK
201: GTLRSPLNAP KMTVQHPADL SKTGDTDDSK ANLCAEHNQT TMKTDTEMVP EQEQKADVLP PTKEEDSMAT S

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.