Factsheet for Zm00001d013331_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90915	Sorghum	nucleus	84.17	84.78
Os03t0734900-00	Rice	nucleus	66.91	68.63
TraesCS4A01G249400.1	Wheat	nucleus	64.75	66.67
TraesCS4B01G065300.1	Wheat	nucleus	60.79	62.83
TraesCS4D01G064200.1	Wheat	nucleus	66.19	59.35
HORVU4Hr1G010840.15	Barley	nucleus	60.07	55.85
Zm00001d033523_P001	Maize	nucleus	37.77	36.46
KRH52968	Soybean	nucleus	37.77	29.91
KRH62255	Soybean	nucleus	37.41	29.71
VIT_18s0001g07730.t01	Wine grape	nucleus	38.85	29.35
PGSC0003DMT400024207	Potato	nucleus	37.05	29.18
Zm00001d014656_P003	Maize	nucleus	36.69	28.49
KRH42075	Soybean	nucleus	35.97	27.93
Zm00001d036494_P001	Maize	nucleus	34.53	26.82
KRH49841	Soybean	nucleus	34.17	26.76
PGSC0003DMT400027729	Potato	nucleus	33.81	25.07
Solyc01g106040.2.1	Tomato	nucleus	33.81	24.87
VIT_03s0038g00580.t01	Wine grape	cytosol	14.75	23.16
Solyc04g076530.2.1	Tomato	nucleus	35.97	15.82

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A060D801	ProteinID:AQK63126.1	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679
InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	EMBL:KJ727983	EMBL:KU512869	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF277	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000221AED4
EnsemblPlantsGene:Zm00001d013331	EnsemblPlants:Zm00001d013331_P001	EnsemblPlants:Zm00001d013331_T001	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

ZIM-transcription factor 2GATA transcription factor 25

Coordinates

chr5:-:8803187..8808065

Molecular Weight (calculated)

29772.5 Da

IEP (calculated)

8.396

GRAVY (calculated)

-0.453

Length

278 amino acids

Sequence
(BLAST)

001: MAAEPAAADH DLRPPLADGA AAAGVGAASL AAAAGAAEAL MSATSEQLTL VYQGDVYVFD PVPPQKVQAV LLVLGGYEVP PGLVNMAVSS ANDEKNTTVA
101: ARRVASLMRF REKRKERCFD KRIRYSVRKE VAQKMKRRKG QFAGRSDFGD GACSSAACGS PANGEDDHFR ETHCQNCGIS SRLTPAMRRG PAGPRSLCNA
201: CGLMWANKGT LRSPLNAPKM TQQLLANPCN MVDTDDKNSN VLPVEHNQAT PKTDSMMPKE EQKLDIRLPT EEDTKAVS

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.