CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013331_P001	Maize	nucleus	84.78	84.17
Os03t0734900-00	Rice	nucleus	63.41	64.58
TraesCS4A01G249400.1	Wheat	nucleus	62.68	64.07
TraesCS4B01G065300.1	Wheat	nucleus	58.33	59.85
TraesCS4D01G064200.1	Wheat	nucleus	64.13	57.1
HORVU4Hr1G010840.15	Barley	nucleus	57.25	52.84
EER91071	Sorghum	nucleus	40.22	36.63
OQU83708	Sorghum	cytosol	15.22	32.31
KRH52968	Soybean	nucleus	37.32	29.34
PGSC0003DMT400024207	Potato	nucleus	36.96	28.9
KRH62255	Soybean	nucleus	36.23	28.57
VIT_18s0001g07730.t01	Wine grape	nucleus	37.68	28.26
KRH42075	Soybean	nucleus	34.42	26.54
KRH49841	Soybean	nucleus	34.06	26.48
EER88899	Sorghum	nucleus	33.7	26.42
Solyc01g106040.2.1	Tomato	nucleus	33.7	24.6
PGSC0003DMT400027729	Potato	nucleus	32.97	24.27
VIT_03s0038g00580.t01	Wine grape	cytosol	15.22	23.73
Solyc04g076530.2.1	Tomato	nucleus	35.14	15.35

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:C5WLV3	InterPro:CCT_domain	EnsemblPlants:EER90915	ProteinID:EER90915
ProteinID:EER90915.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF277	SMART:SM00401	SMART:SM00979	EnsemblPlantsGene:SORBI_3001G100100	SUPFAM:SSF57716	InterPro:Tify_dom
UniParc:UPI00081AE5DA	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:7655454..7660092

Molecular Weight (calculated)

29627.4 Da

IEP (calculated)

8.876

GRAVY (calculated)

-0.490

Length

276 amino acids

Sequence
(BLAST)

001: MAAEPAADDH GPRPPLADGA VAAGGGDASS AAAAAEALMS AASEQLTLVY QGDVFIFDPV PPQKVQAVLL VLGGYEVPPG LVNMAVPTAN DEKNTTVAAR
101: RVASLMRFRE KRKERCFDKR IRYSVRKEVA QKMKRRKGQF AGRSDFGDGA TSSAACVCPT NGEDDHLRET HCQNCGISSR LTPAMRRGPA GPRSLCNACG
201: LMWANKGTLR SPLNAPKMTQ QQLANPSKMG DTDVKNSIVL PVEYNQATVK TDSMMPKQEQ KLDTRPPTEE DIKAVS

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.