CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033523_P001	Maize	nucleus	63.04	66.32
HORVU4Hr1G004080.9	Barley	nucleus	60.4	56.83
Os03t0684000-01	Rice	nucleus	59.41	56.43
TraesCS4A01G285900.2	Wheat	nucleus	59.08	56.11
GSMUA_Achr7P01650_001	Banana	nucleus	42.9	53.28
EER90915	Sorghum	nucleus	36.63	40.22
EER88899	Sorghum	nucleus	40.59	34.94
PGSC0003DMT400024207	Potato	nucleus	40.59	34.84
KRH62255	Soybean	nucleus	38.61	33.43
KRH52968	Soybean	nucleus	38.28	33.05
VIT_18s0001g07730.t01	Wine grape	nucleus	38.94	32.07
OQU83708	Sorghum	cytosol	13.53	31.54
KRH49841	Soybean	nucleus	33.99	29.01
PGSC0003DMT400027729	Potato	nucleus	35.31	28.53
KRH42075	Soybean	nucleus	33.66	28.49
Solyc01g106040.2.1	Tomato	nucleus	33.99	27.25
VIT_03s0038g00580.t01	Wine grape	cytosol	15.84	27.12
Solyc04g076530.2.1	Tomato	nucleus	37.95	18.2

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:8067268	UniProt:C5WPL5	InterPro:CCT_domain	EnsemblPlants:EER91071
ProteinID:EER91071	ProteinID:EER91071.1	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979
EnsemblPlantsGene:SORBI_3001G135400	SUPFAM:SSF57716	unigene:Sbi.8133	InterPro:Tify_dom	UniParc:UPI0001A81F3A	RefSeq:XP_002464073.1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:10671949..10676384

Molecular Weight (calculated)

32441.8 Da

IEP (calculated)

4.320

GRAVY (calculated)

-0.671

Length

303 amino acids

Sequence
(BLAST)

001: MPDTDVDTEM REAAAAAAGA PAGDDDGEGD TEEEEEEDED DEDEVDEDDE EELPAAAPAP TEEQPAPAPI SALPGNPNQL TLVFQGEVYV FESVTPEKVQ
101: AVLLLLGRGE LPPGLAGMVL PNQNENKGYD DILRRTDIPA KRVASLIRFR EKRKERNFDK KIRYAVRKEV ALRMQRRKGQ FAGRASLEGE SPSPGFDPGS
201: QGSGLDFASR ESKCHNCGTS EKMTPAMRRG PAGPRTLCNA CGLMWANKGT LRSCPKAKVE SPVVAIEQGI SDNKALVTPS NDNVAASNGE ATIAAEIGVP
301: KAP

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.