Factsheet for TraesCS4A01G285900.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G004080.9	Barley	nucleus	80.56	79.81
Zm00001d033523_P001	Maize	nucleus	55.49	61.46
Os03t0684000-01	Rice	nucleus	61.44	61.44
EER91071	Sorghum	nucleus	56.11	59.08
GSMUA_Achr7P01650_001	Banana	nucleus	39.5	51.64
TraesCS4A01G249400.1	Wheat	nucleus	34.8	41.11
TraesCS6A01G118800.2	Wheat	nucleus	35.42	33.14
PGSC0003DMT400024207	Potato	nucleus	34.48	31.16
VIT_18s0001g07730.t01	Wine grape	nucleus	35.42	30.71
KRH62255	Soybean	nucleus	33.54	30.57
KRH52968	Soybean	nucleus	33.54	30.48
TraesCS7A01G423100.2	Wheat	nucleus	37.3	29.97
VIT_03s0038g00580.t01	Wine grape	cytosol	15.99	28.81
KRH42075	Soybean	nucleus	31.97	28.49
KRH49841	Soybean	nucleus	30.72	27.61
PGSC0003DMT400027729	Potato	nucleus	31.35	26.67
Solyc01g106040.2.1	Tomato	nucleus	31.03	26.19
Solyc04g076530.2.1	Tomato	nucleus	33.86	17.09

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679
InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203
ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	EnsemblPlantsGene:TraesCS4A01G285900	EnsemblPlants:TraesCS4A01G285900.2
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	TIGR:cd00202	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:-:591711407..591715393

Molecular Weight (calculated)

34289.9 Da

IEP (calculated)

4.347

GRAVY (calculated)

-0.694

Length

319 amino acids

Sequence
(BLAST)

001: MSDPASAQGP DAEMRDAAAA AGDEDGSEDD AEEEEEEHDE VEEEEEEEEL PPAEEPPSPA APEPVSSFPG NPNQLTLLFQ GEVYVFESVT PDKVQAVLLL
101: LGTGEIPPGL SAMVLPSQRE NRGYEDLLQR TDIPAKRVAS LIRFREKRKG RNFDKQIRYA VRKEVAHRMQ RRKGQFVGRA NLEGESPSPG CDPVSQGSGQ
201: DFLSRESKLC QNCGTSEKMT PAMRRGPAGP RTLCNACGLM WANKGTLRSC SKAKVEAPML AIEQCNAAVA QCQTGTDVKA LPAPNNYDVA PSNGEAMDNS
301: VTANATAAAM EGAPKAQSE

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.