Factsheet for Zm00001d033523_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91071	Sorghum	nucleus	66.32	63.04
Os03t0684000-01	Rice	nucleus	62.85	56.74
TraesCS4A01G285900.2	Wheat	nucleus	61.46	55.49
HORVU4Hr1G004080.9	Barley	nucleus	58.68	52.48
GSMUA_Achr7P01650_001	Banana	nucleus	42.71	50.41
Zm00001d013331_P001	Maize	nucleus	36.46	37.77
Zm00001d014656_P003	Maize	nucleus	39.93	32.12
KRH52968	Soybean	nucleus	37.5	30.77
PGSC0003DMT400024207	Potato	nucleus	36.11	29.46
KRH62255	Soybean	nucleus	35.76	29.43
VIT_18s0001g07730.t01	Wine grape	nucleus	36.11	28.26
Zm00001d036494_P001	Maize	nucleus	34.38	27.65
KRH49841	Soybean	nucleus	31.6	25.63
KRH42075	Soybean	nucleus	30.9	24.86
PGSC0003DMT400027729	Potato	nucleus	31.25	24.0
Solyc01g106040.2.1	Tomato	nucleus	30.56	23.28
VIT_03s0038g00580.t01	Wine grape	cytosol	13.54	22.03
Solyc04g076530.2.1	Tomato	nucleus	35.07	15.98

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A1D6KZF6	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679	InterPro:IPR010402
InterPro:IPR013088	ProteinID:ONM07755.1	PFAM:PF00320	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017
PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI000843C863	EnsemblPlantsGene:Zm00001d033523
EnsemblPlants:Zm00001d033523_P001	EnsemblPlants:Zm00001d033523_T001	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

GATA transcription factor 24

Coordinates

chr1:-:265546924..265551800

Molecular Weight (calculated)

30656.6 Da

IEP (calculated)

4.329

GRAVY (calculated)

-0.732

Length

288 amino acids

Sequence
(BLAST)

001: MPDADVDTVI REAAAAAAPA GDDDSEGDTE EEEEEGDEVD EDEDDDEELP AEAPAPDEEQ PAPAPISTLP GNPNQLTLVF QGEVQAVLLL LGRGELPPGL
101: AGMVLPNQNE NKGYDDILQR TDIPAKRVAS LIRFREKRKE RNFDKKIRYA VRKEVALRMQ RRKGQFAGRA SLEGESPAPG CDPGSQGSGL DFASRESMCQ
201: NCGTSEKMTP AMRRGPAGPR TLCNACGLMW ANKGTLRSCP RAKVESPAVA TEQGTSDNKA LATLNNNNVA ASNGEATSAA EKGVPKAP

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.