CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49841	Soybean	nucleus	81.56	82.25
GSMUA_Achr7P01650_001	Banana	nucleus	28.77	42.21
PGSC0003DMT400027729	Potato	nucleus	43.58	41.6
KRH52968	Soybean	nucleus	40.78	41.6
KRH62255	Soybean	nucleus	39.66	40.57
Solyc01g106040.2.1	Tomato	nucleus	42.74	40.48
VIT_03s0038g00580.t01	Wine grape	cytosol	18.16	36.72
Zm00001d013331_P001	Maize	nucleus	27.93	35.97
Os03t0734900-00	Rice	nucleus	27.09	35.79
EER90915	Sorghum	nucleus	26.54	34.42
KRH52967	Soybean	nucleus	28.77	33.88
EER91071	Sorghum	nucleus	28.49	33.66
TraesCS4B01G065300.1	Wheat	nucleus	25.14	33.46
TraesCS4A01G249400.1	Wheat	nucleus	25.14	33.33
KRH62254	Soybean	nucleus	28.49	33.01
KRH72475	Soybean	nucleus	28.49	32.9
KRH16867	Soybean	nucleus	28.21	32.9
Os03t0684000-01	Rice	nucleus	29.05	32.6
TraesCS4A01G285900.2	Wheat	nucleus	28.49	31.97
HORVU4Hr1G010840.15	Barley	nucleus	26.54	31.77
HORVU4Hr1G004080.9	Barley	nucleus	28.49	31.68
KRH44616	Soybean	extracellular, vacuole	29.05	31.14
Zm00001d033523_P001	Maize	nucleus	24.86	30.9
TraesCS4D01G064200.1	Wheat	nucleus	25.98	30.0

Protein Annotations

EntrezGene:100785549	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02004788	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_08G067200
GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	UniProt:I1KQX6	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	EnsemblPlants:KRH42075	ProteinID:KRH42075	ProteinID:KRH42075.1	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF235	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom
UniParc:UPI0002338FA4	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:5162254..5167771

Molecular Weight (calculated)

39897.3 Da

IEP (calculated)

5.011

GRAVY (calculated)

-0.811

Length

358 amino acids

Sequence
(BLAST)

001: MDNSTLNNPG DNAEDPPPPP APMQVFDSFQ PFHYANGSDE GEEAVPAPVA NASSAMRARA SELTISFEGE VYVFPAVTPE KVQAVLLLLG AQEMPNSAPT
101: SDFLLQQNYQ DIREINDPSR SSKLSRRFAS LVRFREKRKE RCFEKKIRYS CRKEVAQRMH RKNGQFASLK EDYKSPAENW DSSNGTPCPD STERRCQHCG
201: ISEKSTPAMR RGPAGPRSLC NACGLMWANK GTLRDLSKAG RIAFEQNELD TSADIKPSTT EAKHSYAKQG KEGSPEETKP VQMDSRRSPE KTNEQFIIGT
301: AESVTNNLSV RLENHALILH EQDTLEDLAD ASGTEFEIPA GFDDQVDIDD ANMRTYWL

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.