CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52967	Soybean	nucleus	77.99	79.28
KRH16867	Soybean	nucleus	52.43	52.77
KRH72475	Soybean	nucleus	50.49	50.32
VIT_18s0001g07720.t01	Wine grape	nucleus	45.95	48.3
Bra013805.1-P	Field mustard	nucleus	39.48	45.35
CDY57283	Canola	nucleus	15.53	44.86
CDY56573	Canola	nucleus	43.04	43.32
Bra019227.1-P	Field mustard	nucleus	36.57	43.3
CDX92633	Canola	nucleus	36.25	43.24
CDY61010	Canola	nucleus	43.04	42.9
AT4G24470.3	Thale cress	nucleus	43.69	42.59
CDY11013	Canola	nucleus	35.28	41.76
GSMUA_Achr10P...	Banana	nucleus	30.74	35.58
OQU83708	Sorghum	cytosol	14.89	35.38
KRH44616	Soybean	extracellular, vacuole	36.25	33.53
KRH52968	Soybean	nucleus	37.54	33.05
KRH62255	Soybean	nucleus	35.28	31.14
KRH49841	Soybean	nucleus	33.66	29.3
KRH42075	Soybean	nucleus	33.01	28.49
GSMUA_Achr7P08720_001	Banana	cytosol	13.59	25.77

Protein Annotations

EntrezGene:100809517	MapMan:15.5.1.3	MapMan:15.5.45	Gene3D:3.30.50.10	EMBL:ACUP02002227	InterPro:CCT_domain
EnsemblPlantsGene:GLYMA_04G096200	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	UniProt:I1JV86	InterPro:IPR000679
InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	EnsemblPlants:KRH62254	ProteinID:KRH62254	ProteinID:KRH62254.1
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI000233A0AB	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:

Description

hypothetical protein

Coordinates

chr4:+:8627546..8632713

Molecular Weight (calculated)

33839.8 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.733

Length

309 amino acids

Sequence
(BLAST)

001: MFGSINQIVS AEDTDGPVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIEE DGAASDHHIH YSSHTIEDDG AAVEDVSAVP GPEISIDNSS QLTLSFRGQV
101: YVFDAVTPDK VQAVLLLLGG NELTSGSQCA ELSSRNQTGE EEYPAKCSLP HRAASLNRFR QKRKERCFDK KVRYSVRQEV ALRMHRNKGQ FTSSKNQDGT
201: NSWGSDQESG QDAVQSETLC CTHCGISSKS TPMMRKGPSG PRSLCNACGL FWANRGTLRD LSKRNLEHSL TPPEQVDEGS NNNALDIRSG IPAQHNNLVN
301: DSKALVSDR

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.