Factsheet for VIT_18s0001g07720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16867	Soybean	nucleus	52.04	49.84
KRH72475	Soybean	nucleus	52.04	49.35
Bra013805.1-P	Field mustard	nucleus	42.86	46.84
KRH52967	Soybean	nucleus	48.3	46.71
KRH62254	Soybean	nucleus	48.3	45.95
CDY57283	Canola	nucleus	16.67	45.79
VIT_03s0038g00480.t01	Wine grape	nucleus	43.88	42.72
CDY56573	Canola	nucleus	43.88	42.02
CDY61010	Canola	nucleus	44.22	41.94
CDY11013	Canola	nucleus	36.73	41.38
CDX92633	Canola	nucleus	36.05	40.93
Bra019227.1-P	Field mustard	nucleus	36.05	40.61
AT4G24470.3	Thale cress	nucleus	43.2	40.06
VIT_09s0054g00440.t01	Wine grape	nucleus	39.12	38.46
GSMUA_Achr10P...	Banana	nucleus	33.67	37.08
OQU83708	Sorghum	cytosol	15.31	34.62
VIT_18s0001g07730.t01	Wine grape	nucleus	36.05	28.8
VIT_03s0038g00580.t01	Wine grape	cytosol	15.31	25.42
GSMUA_Achr7P08720_001	Banana	cytosol	12.93	23.31

Protein Annotations

EntrezGene:100242037	wikigene:100242037	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CCB45668	ProteinID:CCB45668.1
InterPro:CCT_domain	UniProt:F6H146	EMBL:FN595227	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088
EntrezGene:LOC100242037	wikigene:LOC100242037	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI00015C784C	ArrayExpress:VIT_18s0001g07720	EnsemblPlantsGene:VIT_18s0001g07720
EnsemblPlants:VIT_18s0001g07720.t01	unigene:Vvi.1240	RefSeq:XP_002283753	RefSeq:XP_002283753.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:6040104..6058451

Molecular Weight (calculated)

32431.5 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.761

Length

294 amino acids

Sequence
(BLAST)

001: MYGHPQHMSM HNQIAGDDDD GAASESIDNP HVHYDAHVLQ DGVVPGMEVA GDVPSDAVYV ADGSEVALQP SDATNQLTLS FRGQVYVFDS VTHEKVRSVL
101: LLLGTPELSS IAHNMEIVPQ NQRALTDFPG PYNQPHRAAS LNRFRQKRKE RCFDKKIRYN VRQEVALRMQ RNKGQFSSSK KSEGTFSWDS VQDSGQDESP
201: PETLCTHCGT SSKSTPMMRR GPTGPRSLCN ACGLFWANRG SLRDLSKKNQ DHSLNQIERG DGEANDSDCG TSGYINNNHV AFSNSDNPAL IPEQ

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.