Factsheet for VIT_03s0038g00480.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g047640.1.1	Tomato	nucleus	49.34	47.91
Solyc01g106030.2.1	Tomato	nucleus	49.67	46.01
VIT_18s0001g07720.t01	Wine grape	nucleus	42.72	43.88
PGSC0003DMT400083773	Potato	nucleus	45.36	41.77
VIT_09s0054g00440.t01	Wine grape	nucleus	40.4	40.8
GSMUA_Achr10P...	Banana	nucleus	35.1	39.7
OQU83708	Sorghum	cytosol	14.9	34.62
VIT_18s0001g07730.t01	Wine grape	nucleus	39.07	32.07
VIT_03s0038g00580.t01	Wine grape	cytosol	17.88	30.51
GSMUA_Achr7P08720_001	Banana	cytosol	13.58	25.15

Protein Annotations

EntrezGene:100260825	wikigene:100260825	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CCB60907	ProteinID:CCB60907.1
InterPro:CCT_domain	UniProt:F6I1U0	EMBL:FN596515	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	EntrezGene:LOC100260825	wikigene:LOC100260825
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF209	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
TIGR:TC61202	InterPro:Tify_dom	UniParc:UPI00015CD36B	ArrayExpress:VIT_03s0038g00480	EnsemblPlantsGene:VIT_03s0038g00480	EnsemblPlants:VIT_03s0038g00480.t01
unigene:Vvi.869	RefSeq:XP_002270361	RefSeq:XP_002270361.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

No Description!

Coordinates

chr3_random:+:452061..465022

Molecular Weight (calculated)

32128.4 Da

IEP (calculated)

5.428

GRAVY (calculated)

-0.547

Length

302 amino acids

Sequence
(BLAST)

001: MYGSEAMNLR TQIEDDDEDD DVAGAEESID NPQARFEGHV IEDRAVVVMN GVQDVHHNHL YVPGSDFAPV AGGGGGGGGV DQLTLSFQGE VYVFDAVSPE
101: KVQAVLLLLG GYEVPTGIPA PGMVPPNQRG LADFTGRSSQ PQRAASLSRF REKRKERCFD KKIRYTVRKE VALRMQRKKG QFTSSKASSD EVGGGASSDW
201: NAAHGSGQDE PEILCTHCGT SSKTTPMMRR GPAGPRSLCN ACGLKWANKG VLRDLSRVSS GVQETSLKAT QSNGDANESG AITTVPDIVS SNGDNSAVTA
301: ER

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.