Factsheet for VIT_18s0001g07730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52968	Soybean	nucleus	55.98	58.69
KRH62255	Soybean	nucleus	54.89	57.71
PGSC0003DMT400024207	Potato	nucleus	48.64	50.71
GSMUA_Achr7P01650_001	Banana	nucleus	29.35	44.26
TraesCS4B01G065300.1	Wheat	nucleus	30.16	41.26
Os03t0734900-00	Rice	nucleus	30.16	40.96
TraesCS4A01G249400.1	Wheat	nucleus	29.62	40.37
VIT_03s0038g00580.t01	Wine grape	cytosol	19.02	39.55
VIT_03s0038g00480.t01	Wine grape	nucleus	32.07	39.07
EER91071	Sorghum	nucleus	32.07	38.94
Zm00001d013331_P001	Maize	nucleus	29.35	38.85
VIT_09s0054g00440.t01	Wine grape	nucleus	31.25	38.46
Os03t0684000-01	Rice	nucleus	32.88	37.93
EER90915	Sorghum	nucleus	28.26	37.68
HORVU4Hr1G010840.15	Barley	nucleus	30.16	37.12
Zm00001d033523_P001	Maize	nucleus	28.26	36.11
VIT_18s0001g07720.t01	Wine grape	nucleus	28.8	36.05
TraesCS4A01G285900.2	Wheat	nucleus	30.71	35.42
HORVU4Hr1G004080.9	Barley	nucleus	30.71	35.09
TraesCS4D01G064200.1	Wheat	nucleus	28.53	33.87
Solyc04g076530.2.1	Tomato	nucleus	42.12	24.53

Protein Annotations

EntrezGene:100257426	wikigene:100257426	MapMan:15.5.1.3	Gene3D:3.30.50.10	ProteinID:CCB45669	ProteinID:CCB45669.1
InterPro:CCT_domain	UniProt:F6H147	EMBL:FN595227	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	EntrezGene:LOC100257426	wikigene:LOC100257426
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF218	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI0002108FB8	ArrayExpress:VIT_18s0001g07730	EnsemblPlantsGene:VIT_18s0001g07730	EnsemblPlants:VIT_18s0001g07730.t01	RefSeq:XP_002283738
RefSeq:XP_002283738.2	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:+:6060408..6094659

Molecular Weight (calculated)

40182.9 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.588

Length

368 amino acids

Sequence
(BLAST)

001: MAMANPQPLQ ARPFEDHMQI PIQIHDDDAD FEVDGGASAP ADDAMDDVDD DPHINSINPI DHAGVVVASR TSELTLAFEG EVYVFPAVTP EKVQAVLLLL
101: GGRDIPTGVP TIEVPFDQSN RGVGDLPKRS NLSRRIASLV RFREKRKERC FDKKIRYTVR KEVAQRMHRK NGQFASLKES SGPSNWDSAQ SLQGDTTPRP
201: ETVLRRCQHC GVSENSTPAM RRGPAGPRTL CNACGLMWAN KGTLRDLSKG GRNLSLDQIE LGTPIDVKPS IMEGENFSGS QDEHITPEDP SKAVAERTDN
301: PSVNADEEVM SSGVYPSSFT DLHETADDLS HTLPMGIVHS SGNLDDQETL VELANASETE MDIPGQTC

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.