Factsheet for Os03t0684000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G004080.9	Barley	nucleus	63.95	63.35
Zm00001d033523_P001	Maize	nucleus	56.74	62.85
TraesCS4A01G285900.2	Wheat	nucleus	61.44	61.44
EER91071	Sorghum	nucleus	56.43	59.41
GSMUA_Achr7P01650_001	Banana	nucleus	41.07	53.69
Os03t0734900-00	Rice	nucleus	36.68	43.17
Os02t0148500-01	Rice	nucleus	36.05	35.06
KRH52968	Soybean	nucleus	37.62	34.19
VIT_18s0001g07730.t01	Wine grape	nucleus	37.93	32.88
KRH62255	Soybean	nucleus	36.05	32.86
PGSC0003DMT400024207	Potato	nucleus	34.17	30.88
KRH49841	Soybean	nucleus	33.23	29.86
KRH42075	Soybean	nucleus	32.6	29.05
VIT_03s0038g00580.t01	Wine grape	cytosol	15.36	27.68
PGSC0003DMT400027729	Potato	nucleus	31.35	26.67
Solyc01g106040.2.1	Tomato	nucleus	31.35	26.45
Solyc04g076530.2.1	Tomato	nucleus	33.86	17.09

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EntrezGene:4333738	ProteinID:AAK14414.1	ProteinID:ABF98240.1	EMBL:AK105025
ProteinID:BAF12830.1	ProteinID:BAS85787.1	InterPro:CCT_domain	ProteinID:EEE59708.1	GO:GO:0000977	GO:GO:0001085
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088
EnsemblPlantsGene:Os03g0684000	EnsemblPlants:Os03t0684000-01	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	UniProt:Q10F25
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI00000A93B0	RefSeq:XP_015628049.1
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

GATA TRANSCRIPTION FACTOR 18Similar to GATA transcription factor 1 (AtGATA-1). (Os03t0684000-01)

Coordinates

chr3:-:27269707..27274116

Molecular Weight (calculated)

34125.6 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.700

Length

319 amino acids

Sequence
(BLAST)

001: MPDAAAAAAA AQDADAVMRD APADAAAGGG DNDDDDGDDG TEEDEEEDDD EEGDEEELPP AEDPAAPEPV SALLPGSPNQ LTLLFQGEVY VFESVTPEKV
101: QAVLLLLGRS EMPPGLANMV LPNQRENRGY DDLLQRTDIP AKRVASLIRF REKRKERNFD KKIRYAVRKE VALRMQRRKG QFAGRANMEG ESLSPGCELA
201: SQGSGQDFLS RESKCQNCGT SEKMTPAMRR GPAGPRTLCN ACGLMWANKG TLRNCPKAKV ESSVVATEQS NAAVSPSGID NKELVVPNPE NITASHGEVM
301: GDSTPANEAE IGAPKAQSQ

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.