Factsheet for Solyc04g076530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024207	Potato	nucleus	37.34	66.86
KRH62255	Soybean	nucleus	23.73	42.86
KRH52968	Soybean	nucleus	23.73	42.73
VIT_18s0001g07730.t01	Wine grape	nucleus	24.53	42.12
GSMUA_Achr7P01650_001	Banana	nucleus	15.98	41.39
Os03t0734900-00	Rice	nucleus	16.61	38.75
EER91071	Sorghum	nucleus	18.2	37.95
TraesCS4A01G249400.1	Wheat	nucleus	16.14	37.78
TraesCS4B01G065300.1	Wheat	nucleus	15.98	37.55
Solyc01g106030.2.1	Tomato	nucleus	18.83	36.5
Zm00001d013331_P001	Maize	nucleus	15.82	35.97
HORVU4Hr1G010840.15	Barley	nucleus	16.77	35.45
EER90915	Sorghum	nucleus	15.35	35.14
Zm00001d033523_P001	Maize	nucleus	15.98	35.07
Solyc01g106040.2.1	Tomato	nucleus	20.89	34.92
Os03t0684000-01	Rice	nucleus	17.09	33.86
TraesCS4A01G285900.2	Wheat	nucleus	17.09	33.86
HORVU4Hr1G004080.9	Barley	nucleus	17.25	33.85
Solyc10g047640.1.1	Tomato	nucleus	16.46	33.44
TraesCS4D01G064200.1	Wheat	nucleus	16.3	33.23

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:K4BU91	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF218	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc04g076530.2
EnsemblPlants:Solyc04g076530.2.1	InterPro:Tify_dom	UniParc:UPI0002765E82	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

No Description!

Coordinates

chr4:+:61415298..61425445

Molecular Weight (calculated)

70274.5 Da

IEP (calculated)

6.953

GRAVY (calculated)

-0.589

Length

632 amino acids

Sequence
(BLAST)

001: MIPQIWLQKM NRQMQAMNVD IHFSGDGEEV PAGNEKAVGN FPVGYEGPVD SVKVTMPHQT VCSASDVVAL QNRETDFDQL TISFRGKIYV FDGVTTQKVH
101: SLFKLLGGYE YSPGTQALGL LSANQKDYVD HPVHCADPKR LESLIRFYEK RKKRCYEKKI RYGIRQEVAF RMKRKNGLFA RKGSNGPKQE NIPSEETRCI
201: HCGTSSKATP MMRRGPDGQR NLCNACGLTW ANKGIMRTLY KASYDNTELE LEIATKPTMK LLNVPPLIKF LHQSASDLDA LERKPYCINI SSSHPTERLY
301: IHTTDKSIMM AENPRPLQAR PFEDHAPLQS LRMVEEEEEE EEEGDEDGAY EDDGGEETMD EAEDVSMKVL NHHQYGGQSQ QLCGGGVVEV SRTSELTLAF
401: EGEVYVFPAV TPDKVQAVLL LLEGCDIPTA VPTVELPFDN KVEDLPKQAN LSKRFASLVR FREKRKERCF DKKIRYSVRK EVAQRMHRKN GQFASLKSSS
501: GSSSCDSAKS SLEGDGTQHS LTIPGKCHHC GVSENCTPAM RRGPDGPRTL CNACGLKWAN KGTLRDLSKA GRTISVELNE LGTPNNPVKA FAEGSLDHCA
601: DVEKNLFSSG SNLANDIPAG IISSSNNLVE KL

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.