Factsheet for HORVU4Hr1G010840.15

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G065300.1	Wheat	nucleus	77.93	86.62
TraesCS4A01G249400.1	Wheat	nucleus	74.25	82.22
Os03t0734900-00	Rice	nucleus	64.21	70.85
TraesCS4D01G064200.1	Wheat	nucleus	67.56	65.16
Zm00001d013331_P001	Maize	nucleus	55.85	60.07
EER90915	Sorghum	nucleus	52.84	57.25
HORVU4Hr1G004080.9	Barley	nucleus	37.46	34.78
KRH52968	Soybean	nucleus	37.46	31.91
HORVU6Hr1G021570.1	Barley	nucleus	34.45	30.56
KRH62255	Soybean	nucleus	35.45	30.29
VIT_18s0001g07730.t01	Wine grape	nucleus	37.12	30.16
PGSC0003DMT400024207	Potato	nucleus	34.78	29.46
KRH42075	Soybean	nucleus	31.77	26.54
KRH49841	Soybean	nucleus	31.1	26.2
PGSC0003DMT400027729	Potato	nucleus	29.1	23.2
Solyc01g106040.2.1	Tomato	nucleus	28.76	22.75
HORVU7Hr1G097840.6	Barley	nucleus	34.78	22.22
VIT_03s0038g00580.t01	Wine grape	cytosol	13.04	22.03
Solyc04g076530.2.1	Tomato	nucleus	35.45	16.77

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	UniProt:A0A287N6W2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU4Hr1G010840	EnsemblPlants:HORVU4Hr1G010840.15
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200
PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF277
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000B460E87	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:32503302..32507124

Molecular Weight (calculated)

32094.1 Da

IEP (calculated)

8.903

GRAVY (calculated)

-0.572

Length

299 amino acids

Sequence
(BLAST)

001: PHTCARTERA RPPLPGPGPS QPSDPQPMAA EPAADGHDPP LADASGDDDA AAADALLSAA SEQLTLVYQG EVYVFDPVPP QKVQAALLVL GGCELPTGLV
101: SMAGPTAYGE KSTTVAAKRV ASLMRFREKR KERCFDKKIR YGVRKEVAQK MKRRKGQFAG RADFGDAASS SAACVSAADG EDDHFRESHC QNCGVSSRLT
201: PAMRRGPAGP RTLCNACGLM WANKGTLRSP LNAPKMTVQH PANPSKMESV DDDKAIVCAE HNHTAVKMDS EIGVRNKNRN RNCARRPKAT AWLIHDKCI

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.