Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P01650_001 | Banana | nucleus | 27.12 | 19.67 |
| VIT_18s0001g07730.t01 | Wine grape | nucleus | 39.55 | 19.02 |
| KRH42075 | Soybean | nucleus | 36.72 | 18.16 |
| VIT_03s0038g00480.t01 | Wine grape | nucleus | 30.51 | 17.88 |
| PGSC0003DMT400027729 | Potato | nucleus | 35.59 | 16.8 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 27.68 | 16.39 |
| KRH49841 | Soybean | nucleus | 32.77 | 16.34 |
| TraesCS4A01G285900.2 | Wheat | nucleus | 28.81 | 15.99 |
| EER91071 | Sorghum | nucleus | 27.12 | 15.84 |
| Solyc01g106040.2.1 | Tomato | nucleus | 33.33 | 15.61 |
| Os03t0734900-00 | Rice | nucleus | 23.73 | 15.5 |
| Os03t0684000-01 | Rice | nucleus | 27.68 | 15.36 |
| VIT_18s0001g07720.t01 | Wine grape | nucleus | 25.42 | 15.31 |
| EER90915 | Sorghum | nucleus | 23.73 | 15.22 |
| TraesCS4A01G249400.1 | Wheat | nucleus | 22.6 | 14.81 |
| Zm00001d013331_P001 | Maize | nucleus | 23.16 | 14.75 |
| TraesCS4B01G065300.1 | Wheat | nucleus | 21.47 | 14.13 |
| HORVU4Hr1G004080.9 | Barley | nucleus | 25.42 | 13.98 |
| Zm00001d033523_P001 | Maize | nucleus | 22.03 | 13.54 |
| HORVU4Hr1G010840.15 | Barley | nucleus | 22.03 | 13.04 |
| TraesCS4D01G064200.1 | Wheat | nucleus | 20.9 | 11.94 |
Protein Annotations
| MapMan:35.2 | ProteinID:CBI38232 | ProteinID:CBI38232.3 | UniProt:D7U663 | EMBL:FN596515 | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR010399 | PFAM:PF06200 | PFscan:PS51320 |
| PANTHER:PTHR10071 | PANTHER:PTHR10071:SF235 | SMART:SM00979 | InterPro:Tify_dom | UniParc:UPI0001BE4FA6 | ArrayExpress:VIT_03s0038g00580 |
| EnsemblPlantsGene:VIT_03s0038g00580 | EnsemblPlants:VIT_03s0038g00580.t01 | RefSeq:XP_002268872 | RefSeq:XP_002268872.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr3_random:+:512616..527488
Molecular Weight (calculated)
19098.8 Da
IEP (calculated)
5.311
GRAVY (calculated)
-0.258
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: METVNPRPLQ ALPFEEHDDD SMQVPIEING NEGGFEVEDV TGGGGEAVSG GEGGRMSSVN ADEKSSVVAQ RTSELTISFE GEVYVFHAVT PDKVQAVLLL
101: LGGHETPSSV SSSEFLLQQN MKGLVDASKC SNLPRRIASL ISFVKNGKRD ALRRKFGILA ERRLLKGCIV RMGSLHQ
101: LGGHETPSSV SSSEFLLQQN MKGLVDASKC SNLPRRIASL ISFVKNGKRD ALRRKFGILA ERRLLKGCIV RMGSLHQ
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVL
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVL
Arabidopsis Description
GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.