Factsheet for PGSC0003DMT400027729

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106040.2.1	Tomato	nucleus	86.93	86.24
KRH42075	Soybean	nucleus	41.6	43.58
KRH49841	Soybean	nucleus	40.53	42.82
GSMUA_Achr7P01650_001	Banana	nucleus	26.67	40.98
PGSC0003DMT400024207	Potato	nucleus	36.0	38.24
VIT_03s0038g00580.t01	Wine grape	cytosol	16.8	35.59
EER91071	Sorghum	nucleus	28.53	35.31
Zm00001d013331_P001	Maize	nucleus	25.07	33.81
EER90915	Sorghum	nucleus	24.27	32.97
TraesCS4A01G249400.1	Wheat	nucleus	23.73	32.96
TraesCS4B01G065300.1	Wheat	nucleus	22.93	31.97
Os03t0684000-01	Rice	nucleus	26.67	31.35
TraesCS4A01G285900.2	Wheat	nucleus	26.67	31.35
Zm00001d033523_P001	Maize	nucleus	24.0	31.25
Os03t0734900-00	Rice	nucleus	22.13	30.63
PGSC0003DMT400083773	Potato	nucleus	26.4	30.18
TraesCS4D01G064200.1	Wheat	nucleus	24.8	30.0
HORVU4Hr1G004080.9	Barley	nucleus	25.6	29.81
HORVU4Hr1G010840.15	Barley	nucleus	23.2	29.1

Protein Annotations

EntrezGene:102586505	MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	UniProt:M1AQ44	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203
EnsemblPlantsGene:PGSC0003DMG400010684	PGSC:PGSC0003DMG400010684	EnsemblPlants:PGSC0003DMT400027729	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF235	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom
UniParc:UPI0002960C7F	RefSeq:XP_015166114.1	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:

Description

GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400010684]

Coordinates

chr1:+:82700202..82705631

Molecular Weight (calculated)

40851.7 Da

IEP (calculated)

4.670

GRAVY (calculated)

-0.557

Length

375 amino acids

Sequence
(BLAST)

001: MEAADNSRNM LGGQYGVVAF QQEYMNVPIR VDRYGGGGFE ADDISVGGGY EEAMSSGEEL QVCSMPLVAG PVDSGRVMAV PSRTSELNIS FEGQVYVFPA
101: VTPEKVQAVM LLLGGCEVPS YVPNTDSVAL QNTKSVDNTR QNISPRMASL IRFREKKKDR CFEKTIRYAC RKEVAQRMHR KNGQFASLKE GEKSSADNID
201: SGDSAAHSEP TLRRCHHCGT NESETPAMRR GPLGPRTLCN ACGLMWANKG MLRDITKGGS HVPFDKNEPG TPDIKLSTFA PENSYLKQHQ EGSSGETKLT
301: EENPSVTTAE LDMQEATENF ADSSPFCIGS SSVNIDEEDN LDALANASGT EFEIPANFDE QIGIDSHMSV HWPAT

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.