Factsheet for PGSC0003DMT400024207

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g07730.t01	Wine grape	nucleus	50.71	48.64
KRH62255	Soybean	nucleus	46.74	47.14
KRH52968	Soybean	nucleus	45.89	46.15
GSMUA_Achr7P01650_001	Banana	nucleus	29.75	43.03
EER91071	Sorghum	nucleus	34.84	40.59
Os03t0734900-00	Rice	nucleus	29.46	38.38
Solyc04g076530.2.1	Tomato	nucleus	66.86	37.34
TraesCS4B01G065300.1	Wheat	nucleus	28.33	37.17
Zm00001d013331_P001	Maize	nucleus	29.18	37.05
TraesCS4A01G249400.1	Wheat	nucleus	28.33	37.04
EER90915	Sorghum	nucleus	28.9	36.96
Zm00001d033523_P001	Maize	nucleus	29.46	36.11
PGSC0003DMT400027729	Potato	nucleus	38.24	36.0
HORVU4Hr1G004080.9	Barley	nucleus	32.01	35.09
HORVU4Hr1G010840.15	Barley	nucleus	29.46	34.78
TraesCS4A01G285900.2	Wheat	nucleus	31.16	34.48
Os03t0684000-01	Rice	nucleus	30.88	34.17
PGSC0003DMT400083773	Potato	nucleus	30.59	32.93
TraesCS4D01G064200.1	Wheat	nucleus	28.33	32.26

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	UniProt:M1AJN5	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400009353
PGSC:PGSC0003DMG400009353	EnsemblPlants:PGSC0003DMT400024207	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF218	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI00029623D2
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

GATA transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400009353]

Coordinates

chr4:+:65202650..65208448

Molecular Weight (calculated)

38586.0 Da

IEP (calculated)

4.865

GRAVY (calculated)

-0.611

Length

353 amino acids

Sequence
(BLAST)

001: MAENPRPLQA RPYEDHAPLP SIRMVEEEEE EEDDDDGAYE DDGGEETMDE AEDVSMKVLN HHQYGGQSQQ LYGGGGGVVE VSRTSELTLA FEGEVYVFPA
101: VTPDKVQAVL LLLGGCDIPT AVPTVELPFD NKVEDLPKQA NLSKRFASLV RFREKRKERC FDKKIRYSVR KEVAQRMHRK NGQFASLKSS SGSSSCDSAK
201: SSLEGYGTQH SVTVPGKCHH CGVSENCTPA MRRGPDGPRT LCNACGLKWA NKGTLRDLSK AGRKTSVEPN ELVCFISKNE KYGTPDNPVK AFAEGSLDHC
301: ADLEKNLFSS GSNLENDIPV GIFSSSSNLV EQETLVGFGN ASKTEVVIPA NFD

Best Arabidopsis Sequence Match ( AT3G21175.1 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG QFTSAKSSND DSGSTGSDWG
201: SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.