CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52968	Soybean	nucleus	83.71	83.48
VIT_18s0001g07730.t01	Wine grape	nucleus	57.71	54.89
PGSC0003DMT400024207	Potato	nucleus	47.14	46.74
GSMUA_Achr7P01650_001	Banana	nucleus	29.43	42.21
KRH49841	Soybean	nucleus	40.29	39.72
KRH42075	Soybean	nucleus	40.57	39.66
TraesCS4A01G249400.1	Wheat	nucleus	30.0	38.89
Os03t0734900-00	Rice	nucleus	30.0	38.75
TraesCS4B01G065300.1	Wheat	nucleus	29.71	38.66
EER91071	Sorghum	nucleus	33.43	38.61
KRH16867	Soybean	nucleus	32.86	37.46
Zm00001d013331_P001	Maize	nucleus	29.71	37.41
KRH72475	Soybean	nucleus	32.57	36.77
EER90915	Sorghum	nucleus	28.57	36.23
Os03t0684000-01	Rice	nucleus	32.86	36.05
Zm00001d033523_P001	Maize	nucleus	29.43	35.76
KRH52967	Soybean	nucleus	30.86	35.53
HORVU4Hr1G010840.15	Barley	nucleus	30.29	35.45
KRH62254	Soybean	nucleus	31.14	35.28
HORVU4Hr1G004080.9	Barley	nucleus	32.29	35.09
TraesCS4A01G285900.2	Wheat	nucleus	30.57	33.54
TraesCS4D01G064200.1	Wheat	nucleus	29.14	32.9
KRH44616	Soybean	extracellular, vacuole	29.43	30.84
Solyc04g076530.2.1	Tomato	nucleus	42.86	23.73

Protein Annotations

EntrezGene:100801328	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02002227	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_04G096300
GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0045944	UniProt:I1JV87	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	EnsemblPlants:KRH62255	ProteinID:KRH62255	ProteinID:KRH62255.1	PFAM:PF00320	PFAM:PF06200
PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF218
SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0001BA5889	InterPro:Znf_GATA
InterPro:Znf_NHR/GATA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8635554..8654734

Molecular Weight (calculated)

37870.4 Da

IEP (calculated)

4.397

GRAVY (calculated)

-0.749

Length

350 amino acids

Sequence
(BLAST)

001: MATVNPQPLQ FEDPAIPVDD DDDDDDDGGD DDAMDELEDA NVNSVNVTNA ASVNHEAVVA MPSRTSELTL SFEGEVYVFP AVTPQKVQAV LLLLGGRDVQ
101: AGVPAVEPPF DQSNRDMGDT PKRSNLSRRI ASLVRFREKR KERCFDKKIR YSVRKEVAQR MHRKNGQFAS LKESPGSSNW DSAQSSGQVG TSHSESVRRC
201: HHCGVGENNT PAMRRGPAGP RTLCNACGLM WANKGTLRDL SKGGRNLSVE QSDLDTPIDV KPTSVLEGEL PGIHDEQGSS EDPSKSNAAD GSSNHAVNPS
301: DEELPETAEH FTNVLPLGIG HSSTNDSEQE PLVELSNPSD TDIDIPGNFD

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.