CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16867	Soybean	nucleus	91.61	92.51
KRH52967	Soybean	nucleus	54.19	55.26
VIT_18s0001g07720.t01	Wine grape	nucleus	49.35	52.04
KRH62254	Soybean	nucleus	50.32	50.49
CDY57283	Canola	nucleus	16.45	47.66
Bra013805.1-P	Field mustard	nucleus	40.97	47.21
CDX92633	Canola	nucleus	39.03	46.72
AT4G24470.3	Thale cress	nucleus	46.13	45.11
CDY11013	Canola	nucleus	37.42	44.44
Bra019227.1-P	Field mustard	nucleus	37.42	44.44
CDY56573	Canola	nucleus	42.58	43.0
CDY61010	Canola	nucleus	41.94	41.94
OQU83708	Sorghum	cytosol	15.16	36.15
KRH44616	Soybean	extracellular, vacuole	37.74	35.03
GSMUA_Achr10P...	Banana	nucleus	29.68	34.46
KRH62255	Soybean	nucleus	36.77	32.57
KRH52968	Soybean	nucleus	36.13	31.91
KRH49841	Soybean	nucleus	33.55	29.3
KRH42075	Soybean	nucleus	32.9	28.49
GSMUA_Achr7P08720_001	Banana	cytosol	13.55	25.77

Protein Annotations

EntrezGene:100776838	MapMan:15.5.1.3	Gene3D:3.30.50.10	EMBL:ACUP02001216	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_02G215600
GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355	GO:GO:0006366
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	UniProt:K7K9Y2	EnsemblPlants:KRH72475	ProteinID:KRH72475	ProteinID:KRH72475.1	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom
UniParc:UPI000233742F	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:40195551..40200143

Molecular Weight (calculated)

33341.7 Da

IEP (calculated)

6.505

GRAVY (calculated)

-0.732

Length

310 amino acids

Sequence
(BLAST)

001: MEPSAMYGPS QPLNIPSRIG AGERDDGSGN EPAVDGHHHH IQYETHALDD GAAGGAVVVE DVTSDAVYVS GGGGPEESSQ LTLSFRGQVY VFDAVTPDKV
101: QAVLLLLGGC ELSSGGSPCV DPGAQQNQRG SMEFPKCSLP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMHRNKGQ FTSSKKQDGA NSYGTDQDSG
201: QDDSQSETSC KHCGTSSKST PMMRRGPSGP RSLCNACGLF WANRGALRDL SKRNQEHSLP PVEQVDGGND PDCRTAAADP AQNNLAAFSE PVNPALVADR
301: KVFQSQKMLE

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.