Factsheet for Bra013805.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61010	Canola	nucleus	80.67	70.0
AT4G24470.3	Thale cress	nucleus	67.29	57.1
Bra019227.1-P	Field mustard	nucleus	52.04	53.64
VIT_18s0001g07720.t01	Wine grape	nucleus	46.84	42.86
KRH52967	Soybean	nucleus	47.21	41.78
KRH16867	Soybean	nucleus	47.58	41.69
KRH72475	Soybean	nucleus	47.21	40.97
KRH62254	Soybean	nucleus	45.35	39.48
Bra014292.1-P	Field mustard	nucleus	35.69	36.92
Bra031258.1-P	Field mustard	nucleus	40.52	33.96
GSMUA_Achr10P...	Banana	nucleus	31.97	32.21
OQU83708	Sorghum	cytosol	15.24	31.54
Bra023900.1-P	Field mustard	nucleus	37.92	28.1
GSMUA_Achr7P08720_001	Banana	cytosol	14.13	23.31

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra013805	EnsemblPlants:Bra013805.1	EnsemblPlants:Bra013805.1-P	InterPro:CCT_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046872	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M4DBE5
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI000254645F	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:

Description

AT4G24470 (E=5e-116) ZIM, TIFY1 | TIFY1; transcription factor

Coordinates

chrA01:+:7840434..7842284

Molecular Weight (calculated)

29288.4 Da

IEP (calculated)

7.205

GRAVY (calculated)

-0.609

Length

269 amino acids

Sequence
(BLAST)

001: MDDIPHPDSI YAASNLIPDG SHLVPHRSEG SELLGSRPME GANQLTISFR GQVYVFDAVG PEKVDAVLSL LGGSTELSSV QPGMELAPQN HMPAVVEYQN
101: RYSHPQRAQS LDRFRKKRNA RCFEKKVRYG VRQEVALRMA RNKGQFTSAK MTEGAYNSGT DQDSAQDDSR PEILCTHCGI SSSCTPMMRR GPSGPRTLCN
201: ACGLFWTNRG TLRDLSKRTE ENQMAIIKPV EGGSDAGANN SNSEPATVEG HTVLVSLANG DQSNLLGNH

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.