Factsheet for GSMUA_Achr10P07970_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P04520_001	Banana	nucleus	23.22	38.27
GSMUA_Achr3P05620_001	Banana	nucleus	34.83	37.2
GSMUA_Achr7P01650_001	Banana	nucleus	33.33	36.48
VIT_03s0038g00480.t01	Wine grape	nucleus	39.7	35.1
OQU83708	Sorghum	cytosol	16.48	33.85
VIT_18s0001g07720.t01	Wine grape	nucleus	37.08	33.67
CDX92633	Canola	nucleus	31.84	32.82
GSMUA_Achr9P13870_001	Banana	nucleus	36.7	32.34
Solyc10g047640.1.1	Tomato	nucleus	37.45	32.15
Bra013805.1-P	Field mustard	nucleus	32.21	31.97
Bra019227.1-P	Field mustard	nucleus	30.71	31.42
KRH52967	Soybean	nucleus	35.58	31.25
CDY57283	Canola	nucleus	12.36	30.84
KRH62254	Soybean	nucleus	35.58	30.74
CDY11013	Canola	nucleus	29.96	30.65
PGSC0003DMT400083773	Potato	nucleus	36.7	29.88
Solyc01g106030.2.1	Tomato	nucleus	36.33	29.75
KRH72475	Soybean	nucleus	34.46	29.68
KRH16867	Soybean	nucleus	33.33	28.99
CDY61010	Canola	nucleus	32.96	28.39
GSMUA_Achr10P...	Banana	nucleus	34.46	28.31
CDY56573	Canola	nucleus	31.84	27.69
AT4G24470.3	Thale cress	nucleus	32.58	27.44
GSMUA_Achr7P08720_001	Banana	cytosol	12.36	20.25

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr10G07970_001	EnsemblPlants:GSMUA_Achr10P07970_001	EnsemblPlants:GSMUA_Achr10T07970_001
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M0RGC3	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI000296A9FF
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G07970_001]

Coordinates

chr10:-:18007230..18018762

Molecular Weight (calculated)

28977.0 Da

IEP (calculated)

8.719

GRAVY (calculated)

-0.619

Length

267 amino acids

Sequence
(BLAST)

001: MYGSMDDDPF MRGRHFVSEI DGIGAATTAA EAEVAPSIEG STPLQPQPPG PNQLTLSFQG QVYIFDSVQP ERVHAVLLLL NGQQSPEFGG MAVPSHQNYR
101: SVDEASGSKN GQRLASILRF KEKKKNLCFK KKVLYTVRKE VASRMKRNKG QFASSKANSE EVASVTSSWD PAKSNDQEEK DQHAFCLNCG TSKNSTPMMR
201: RGPAGPKSLC NACGLTWANK HSLRSHLKVS APGTQTMIQD EQGDKDSVVA SNSYMFSAST DGHGSIS

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.