Factsheet for Solyc01g106030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083773	Potato	nucleus	52.15	51.83
Solyc10g047640.1.1	Tomato	nucleus	47.85	50.16
VIT_03s0038g00480.t01	Wine grape	nucleus	46.01	49.67
GSMUA_Achr10P...	Banana	nucleus	29.75	36.33
OQU83708	Sorghum	cytosol	12.27	30.77
Solyc01g106040.2.1	Tomato	nucleus	32.82	28.31
GSMUA_Achr7P08720_001	Banana	cytosol	11.35	22.7
Solyc04g076530.2.1	Tomato	nucleus	36.5	18.83

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006355	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:K4B2H2	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PFscan:PS51320
PANTHER:PTHR10071	PANTHER:PTHR10071:SF209	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	EnsemblPlantsGene:Solyc01g106030.2
EnsemblPlants:Solyc01g106030.2.1	InterPro:Tify_dom	UniParc:UPI0002767529	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

No Description!

Coordinates

chr1:+:94008197..94014906

Molecular Weight (calculated)

35020.7 Da

IEP (calculated)

6.374

GRAVY (calculated)

-0.784

Length

326 amino acids

Sequence
(BLAST)

001: MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AVGGGGSGGG GIESMDNPTP HIRYDQHHHS HSHALHNGGA GGSMEMNGVE GVSHNALYGP
101: PSEIVPTAGS GASDQLTLSF QGEVYVFDAV SPEKVQAVLL LLGGYEVPPG IPAVNVVPQS QRASGDFPGR LNQPERAASL NRFREKRKER CFDKKIRYTV
201: RKEVAMRMQR KKGQFTSAKS IPDEVGSSAD WNEGSGQEEQ ETSCRHCNIS SKSTPMMRRG PAGPRSLCNA CGLKWANKGI LRDLSKVPAP GTQDQTAKPG
301: EQSHGEPNGS DDMAAIITPD DNNPVG

Best Arabidopsis Sequence Match ( AT3G21175.2 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRGLS GTPQRLSVPQ RLASLLRFRE KRKGRNFDKT IRYTVRKEVA LRMQRKKGQF TSAKSSNDDS GSTGSDWGSN
201: QSWAVEGTET QKPEVLCRHC GTSEKSTPMM RRGPDGPRTL CNACGLMWAN KGTLRDLSKV PPPQTPQHLS LNKNEDANLE ADQMMEVTGD ISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.