CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57283	Canola	nucleus	18.46	22.43
GSMUA_Achr10P...	Banana	nucleus	33.85	16.48
KRH52967	Soybean	nucleus	36.15	15.46
CDX92633	Canola	nucleus	30.77	15.44
Bra019227.1-P	Field mustard	nucleus	30.77	15.33
CDY11013	Canola	nucleus	30.77	15.33
VIT_18s0001g07720.t01	Wine grape	nucleus	34.62	15.31
Bra013805.1-P	Field mustard	nucleus	31.54	15.24
EER90915	Sorghum	nucleus	32.31	15.22
KRH72475	Soybean	nucleus	36.15	15.16
KRH16867	Soybean	nucleus	35.38	14.98
VIT_03s0038g00480.t01	Wine grape	nucleus	34.62	14.9
KRH62254	Soybean	nucleus	35.38	14.89
GSMUA_Achr7P08720_001	Banana	cytosol	17.69	14.11
Solyc10g047640.1.1	Tomato	nucleus	33.08	13.83
AT4G24470.3	Thale cress	nucleus	33.08	13.56
EER91071	Sorghum	nucleus	31.54	13.53
CDY56573	Canola	nucleus	31.54	13.36
CDY61010	Canola	nucleus	31.54	13.23
Solyc01g106030.2.1	Tomato	nucleus	30.77	12.27
PGSC0003DMT400083773	Potato	nucleus	30.77	12.2
EER88899	Sorghum	nucleus	31.54	11.65

Protein Annotations

Gene3D:3.30.50.10	MapMan:35.2	UniProt:A0A1Z5RJ01	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000679	InterPro:IPR013088
EnsemblPlants:OQU83708	ProteinID:OQU83708	ProteinID:OQU83708.1	PFAM:PF00320	ScanProsite:PS00344	PANTHER:PTHR10071
PANTHER:PTHR10071:SF209	SMART:SM00401	EnsemblPlantsGene:SORBI_3005G162400	SUPFAM:SSF57716	TMHMM:TMhelix	UniParc:UPI000B8BAA6C
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:63762689..63763261

Molecular Weight (calculated)

14687.5 Da

IEP (calculated)

10.202

GRAVY (calculated)

-0.560

Length

130 amino acids

Sequence
(BLAST)

001: MDKKDFNLNI WHQVPPIVVP QNFDRATAMS RYLKKRKSTM KADYSVRREI ALRITRRGGK FAPSEKNSEN SVGTEAAELQ FCANCRESSE VTPQMRRGPT
101: GAKNFCNACG LAWATYVSAP ISHSFIYHSL

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.