CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62254	Soybean	nucleus	79.28	77.99
KRH16867	Soybean	nucleus	56.25	55.7
KRH72475	Soybean	nucleus	55.26	54.19
VIT_18s0001g07720.t01	Wine grape	nucleus	46.71	48.3
Bra013805.1-P	Field mustard	nucleus	41.78	47.21
CDX92633	Canola	nucleus	38.49	45.17
CDY56573	Canola	nucleus	45.39	44.95
CDY57283	Canola	nucleus	15.79	44.86
CDY61010	Canola	nucleus	44.41	43.55
CDY11013	Canola	nucleus	37.17	43.3
Bra019227.1-P	Field mustard	nucleus	36.84	42.91
AT4G24470.3	Thale cress	nucleus	44.74	42.9
OQU83708	Sorghum	cytosol	15.46	36.15
GSMUA_Achr10P...	Banana	nucleus	31.25	35.58
KRH44616	Soybean	extracellular, vacuole	36.18	32.93
KRH52968	Soybean	nucleus	36.51	31.62
KRH62255	Soybean	nucleus	35.53	30.86
KRH49841	Soybean	nucleus	34.54	29.58
KRH42075	Soybean	nucleus	33.88	28.77
GSMUA_Achr7P08720_001	Banana	cytosol	14.47	26.99

Protein Annotations

EntrezGene:100784789	MapMan:15.5.1.3	MapMan:15.5.45	Gene3D:3.30.50.10	EMBL:ACUP02003444	InterPro:CCT_domain
EnsemblPlantsGene:GLYMA_06G097900	GO:GO:0000977	GO:GO:0001085	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003682	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0045944	GO:GO:0046872	UniProt:I1K9S5	InterPro:IPR000679
InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	EnsemblPlants:KRH52967	ProteinID:KRH52967	ProteinID:KRH52967.1
PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017
PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716
InterPro:Tify_dom	UniParc:UPI00023C287D	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:	:

Description

hypothetical protein

Coordinates

chr6:+:7769866..7775571

Molecular Weight (calculated)

33443.3 Da

IEP (calculated)

6.069

GRAVY (calculated)

-0.795

Length

304 amino acids

Sequence
(BLAST)

001: MFGSMNKIVS AEDTDGSVSD HHIHYSSHTI EDDGAASDHH IHYSSHTIEE DGAVSNHHIH YSSHTIEEDG GATVEEVSAV PPLEISINDS SQLTISFRGQ
101: VYVFDAVTPD KVQAVLLLLG GNELTSGSQC AELSSQNQTG EEEYPAKCSL PQRAASLNRF RQKRKERCFD KKVRYSVRQE VALRMHRNKG QFTSSKNQDG
201: TNSWGSDQES GQDAVQSETL CTHCGISSKS TPMMRRGPSG PRSLCNACGL FWANRGTLRD LSKRNQEHSL APPEQVDEGS NNNDFDCRSG IPAQHNNLVN
301: DNKA

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.