CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11013	Canola	nucleus	91.12	90.42
Bra019227.1-P	Field mustard	nucleus	66.8	66.28
CDY57283	Canola	nucleus	22.78	55.14
CDY56573	Canola	nucleus	59.07	49.84
AT4G24470.3	Thale cress	nucleus	59.46	48.58
CDY61010	Canola	nucleus	57.92	48.39
KRH72475	Soybean	nucleus	46.72	39.03
CDY46552	Canola	nucleus	39.0	38.7
KRH52967	Soybean	nucleus	45.17	38.49
KRH16867	Soybean	nucleus	45.17	38.11
CDY50073	Canola	nucleus	40.54	36.46
KRH62254	Soybean	nucleus	43.24	36.25
VIT_18s0001g07720.t01	Wine grape	nucleus	40.93	36.05
CDY19576	Canola	nucleus	39.77	34.45
CDY52949	Canola	nucleus	38.61	33.78
GSMUA_Achr10P...	Banana	nucleus	32.82	31.84
OQU83708	Sorghum	cytosol	15.44	30.77
CDY37312	Canola	cytosol, nucleus, plastid	38.22	26.98
CDY27538	Canola	nucleus	38.61	25.91
GSMUA_Achr7P08720_001	Banana	cytosol	14.67	23.31

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078DZC7	InterPro:CCT_domain	EnsemblPlants:CDX92633	ProteinID:CDX92633
ProteinID:CDX92633.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00154440001	InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402
InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114
PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401	SMART:SM00979
SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0004EE1278	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	:

Description

BnaC07g38910D

Coordinates

chrLK031873:+:110357..111856

Molecular Weight (calculated)

28082.8 Da

IEP (calculated)

6.228

GRAVY (calculated)

-0.559

Length

259 amino acids

Sequence
(BLAST)

001: MFPQLEINPY QIGSTLGEDH VSASAAHIPY IHEIANHPDS IYAASGLIPD GSQLLDSPAP EGANQLTISY RGQVYVFDAV GPEKVDAVLS LLGGSTAPQE
101: MEIAQQNHMP VVEHQSRCSH PQRAQSLDRF RKKRSARCFA NQVRYGVRQE VALRMPRNKG QFSSAKTADG AYNSGTDQDN AHDDGRPEIS CTHCGVSSTC
201: TPMMRRGPSG PRTLCNACGL FWVSRGTLRD LSKKTEDNQV AMIEPGELGG DADANNSDL

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.