CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92633	Canola	nucleus	90.42	91.12
Bra019227.1-P	Field mustard	nucleus	65.52	65.52
CDY57283	Canola	nucleus	22.61	55.14
CDY56573	Canola	nucleus	58.62	49.84
CDY61010	Canola	nucleus	58.24	49.03
AT4G24470.3	Thale cress	nucleus	56.7	46.69
CDY46552	Canola	nucleus	37.93	37.93
KRH72475	Soybean	nucleus	44.44	37.42
KRH52967	Soybean	nucleus	43.3	37.17
KRH16867	Soybean	nucleus	43.3	36.81
VIT_18s0001g07720.t01	Wine grape	nucleus	41.38	36.73
CDY50073	Canola	nucleus	39.08	35.42
KRH62254	Soybean	nucleus	41.76	35.28
CDY52949	Canola	nucleus	38.31	33.78
CDY19576	Canola	nucleus	37.55	32.78
OQU83708	Sorghum	cytosol	15.33	30.77
GSMUA_Achr10P...	Banana	nucleus	30.65	29.96
CDY37312	Canola	cytosol, nucleus, plastid	37.55	26.7
CDY27538	Canola	nucleus	37.16	25.13
GSMUA_Achr7P08720_001	Banana	cytosol	13.79	22.09

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078FG57	UniProt:A0A078FG57	InterPro:CCT_domain	EnsemblPlants:CDY11013
ProteinID:CDY11013	ProteinID:CDY11013.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00048962001	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF192	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0004EECBEA	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA

Description

BnaA03g46720DBnaA03g46720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG57]

Coordinates

chrLK032008:+:641235..643050

Molecular Weight (calculated)

28288.0 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.579

Length

261 amino acids

Sequence
(BLAST)

001: MFPQLEINPY HIGSTLGEDH VSASAARIPY IDEIANHPDS IYAASGLIPD GSQLLDSPAP EGANQLTVSY RGQVYVFDSV GPEKVDAVLS LLGGSTAAPQ
101: GMEIAQQNHH MPVVEHQSRC SHPQRAQSLD RFRKKRSARC FANQVRYGVR QEVALRMPRN KGQFSSATTA DGAYNSGTDQ DNAHDDGRPE LSCTHCGVSS
201: TCTPMMRRGP SGPRTLCNAC GLFWVSRGTL RDLPKKTEDN QVAMIEPGEL GSDANANNSN Y

Best Arabidopsis Sequence Match ( AT4G24470.2 )
(BLAST)

001: MFGRHSIIPN NQIGTASASA GEDHVSASAT SGHIPYDDME EIPHPDSIYG AASDLIPDGS QLVAHRSDGS ELLVSRPPEG ANQLTISFRG QVYVFDAVGA
101: DKVDAVLSLL GGSTELAPGP QVMELAQQQN HMPVVEYQSR CSLPQRAQSL DRFRKKRNAR CFEKKVRYGV RQEVALRMAR NKGQFTSSKM TDGAYNSGTD
201: QDSAQDDAHP EISCTHCGIS SKCTPMMRRG PSGPRTLCNA CGLFWANRGT LRDLSKKTEE NQLALMKPDD GGSVADAANN LNTEAASVEE HTSMVSLANG
301: DNSNLLGDH

Arabidopsis Description

ZIMGATA-type zinc finger protein with TIFY domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JQX4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.