CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148
CDY19576
CDY24801
CDY27538
CDY35449
CDY37312
CDY50073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21175.1	CDY19576	AT3G21175.1	21798944
AT3G21175.1	CDY27538	AT3G21175.1	21798944
AT3G21175.1	CDY37312	AT3G21175.1	21798944
AT3G21175.1	CDY50073	AT3G21175.1	21798944
AT3G21175.1	CDY08148	AT3G49580.1	21798944
AT3G21175.1	CDY24801	AT4G23770.1	21798944
AT3G21175.1	CDY35449	AT4G23770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023900.1-P	Field mustard	nucleus	78.75	79.61
CDY27538	Canola	nucleus	82.56	78.5
CDY50073	Canola	nucleus	48.77	62.15
AT3G21175.1	Thale cress	nucleus	46.59	57.58
CDY19576	Canola	nucleus	46.59	57.19
CDY46552	Canola	nucleus	39.24	55.17
GSMUA_Achr2P04520_001	Banana	nucleus	22.34	50.62
CDY52949	Canola	nucleus	39.24	48.65
GSMUA_Achr3P05620_001	Banana	nucleus	31.61	46.4
VIT_09s0054g00440.t01	Wine grape	nucleus	36.51	44.82
GSMUA_Achr9P13870_001	Banana	nucleus	34.88	42.24
KRH44616	Soybean	extracellular, vacuole	38.15	41.92
CDY57283	Canola	nucleus	11.44	39.25
GSMUA_Achr10P...	Banana	nucleus	34.6	39.08
CDX92633	Canola	nucleus	26.98	38.22
CDY11013	Canola	nucleus	26.7	37.55
Os02t0148500-01	Rice	nucleus	31.34	35.06
Zm00001d036494_P001	Maize	nucleus	33.24	34.08
CDY56573	Canola	nucleus	28.34	33.88
CDY61010	Canola	nucleus	28.61	33.87
Zm00001d014656_P003	Maize	nucleus	32.43	33.24
EER88899	Sorghum	nucleus	31.88	33.24
TraesCS6B01G146800.2	Wheat	nucleus	29.43	31.58
TraesCS7B01G323600.1	Wheat	nucleus	33.52	31.54
TraesCS7D01G416000.2	Wheat	nucleus	33.52	31.54
TraesCS6D01G108700.2	Wheat	nucleus	29.16	31.29
TraesCS7A01G423100.2	Wheat	nucleus	33.79	31.23
TraesCS6A01G118800.2	Wheat	nucleus	28.34	30.5
HORVU6Hr1G021570.1	Barley	nucleus	27.52	29.97
HORVU7Hr1G097840.6	Barley	nucleus	32.7	25.64

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	GO:A0A078HHF3	UniProt:A0A078HHF3	InterPro:CCT_domain	EnsemblPlants:CDY37312
ProteinID:CDY37312	ProteinID:CDY37312.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00063835001	InterPro:IPR000679	InterPro:IPR010399
InterPro:IPR010402	InterPro:IPR013088	PFAM:PF00320	PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344
PFscan:PS50114	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071	PANTHER:PTHR10071:SF282	SMART:SM00401
SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0004EDB953	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA
SEG:seg	:	:	:	:	:

Description

BnaA01g25320DBnaA01g25320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHF3]

Coordinates

chrLK032397:-:270380..274898

Molecular Weight (calculated)

40684.0 Da

IEP (calculated)

7.346

GRAVY (calculated)

-0.653

Length

367 amino acids

Sequence
(BLAST)

001: MRSFLRFNLD MSFISTVVFG EFIVDDKRSN EVKKFWLRNL FVLLCSRFTK LQEEIVRSGS GDAAPFVVKS ALRMSETMDD DLHGNNGGMH NGGGVQDPNH
101: SMHVQYDHHG MMDEQHADDV MNEGLEADIP SHLGNTSDHR GEVVDRGSEN GDQLTLSFQG QVYVFDRVLP EKVQAVLLLL GGREVPNTVP TNVGSPHQNN
201: RVLGLSGTPQ RFSAPQRQAS LLRFREKRKG RNFDKTIRYT VRKEVALRMQ RKKGQFTSAK SSNEDSASNG SDWGSGQSWA LEGTETQKPE ALCRHCGTSE
301: KSTPMMRRGP EGPRTLCNAC GLMWANKGAL RDLSKAPPPP TAQNLPANKI DESILEAELA GDISNSQ

Best Arabidopsis Sequence Match ( AT3G21175.1 )
(BLAST)

001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG QFTSAKSSND DSGSTGSDWG
201: SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ

Arabidopsis Description

GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.