Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50073 | Canola | nucleus | 65.66 | 67.71 |
| AT1G51600.1 | Thale cress | nucleus | 68.69 | 67.55 |
| CDY19576 | Canola | nucleus | 60.27 | 59.87 |
| Bra031258.1-P | Field mustard | nucleus | 61.28 | 56.7 |
| GSMUA_Achr2P04520_001 | Banana | nucleus | 29.29 | 53.7 |
| CDY27538 | Canola | nucleus | 62.96 | 48.45 |
| GSMUA_Achr3P05620_001 | Banana | nucleus | 39.73 | 47.2 |
| CDY37312 | Canola | cytosol, nucleus, plastid | 57.58 | 46.59 |
| Bra023900.1-P | Field mustard | nucleus | 56.57 | 46.28 |
| VIT_09s0054g00440.t01 | Wine grape | nucleus | 46.13 | 45.82 |
| KRH44616 | Soybean | extracellular, vacuole | 50.84 | 45.21 |
| GSMUA_Achr9P13870_001 | Banana | nucleus | 44.44 | 43.56 |
| GSMUA_Achr10P... | Banana | nucleus | 41.08 | 37.54 |
| Os02t0148500-01 | Rice | nucleus | 40.4 | 36.59 |
| AT4G24470.3 | Thale cress | nucleus | 37.37 | 35.02 |
| EER88899 | Sorghum | nucleus | 41.41 | 34.94 |
| Zm00001d036494_P001 | Maize | nucleus | 40.74 | 33.8 |
| Zm00001d014656_P003 | Maize | nucleus | 39.73 | 32.96 |
| TraesCS7A01G423100.2 | Wheat | nucleus | 43.1 | 32.24 |
| TraesCS7B01G323600.1 | Wheat | nucleus | 41.75 | 31.79 |
| TraesCS6A01G118800.2 | Wheat | nucleus | 36.36 | 31.67 |
| TraesCS7D01G416000.2 | Wheat | nucleus | 41.41 | 31.54 |
| TraesCS6B01G146800.2 | Wheat | nucleus | 35.69 | 30.99 |
| TraesCS6D01G108700.2 | Wheat | nucleus | 35.69 | 30.99 |
| HORVU6Hr1G021570.1 | Barley | nucleus | 34.68 | 30.56 |
| HORVU7Hr1G097840.6 | Barley | nucleus | 40.4 | 25.64 |
Protein Annotations
| MapMan:15.5.1.3 | Gene3D:3.30.50.10 | EntrezGene:821670 | EMBL:AB119060 | ProteinID:AEE76470.1 | ProteinID:AEE76471.1 |
| EMBL:AK118169 | ArrayExpress:AT3G21175 | EnsemblPlantsGene:AT3G21175 | RefSeq:AT3G21175 | TAIR:AT3G21175 | RefSeq:AT3G21175-TAIR-G |
| EnsemblPlants:AT3G21175.1 | TAIR:AT3G21175.1 | EMBL:AY042817 | EMBL:AY064628 | EMBL:AY085109 | Unigene:At.20286 |
| ProteinID:BAB01708.1 | InterPro:CCT_domain | GO:GO:0000977 | GO:GO:0001085 | GO:GO:0001228 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0045944 | GO:GO:0046872 |
| InterPro:IPR000679 | InterPro:IPR010399 | InterPro:IPR010402 | InterPro:IPR013088 | RefSeq:NP_566676.1 | RefSeq:NP_850618.1 |
| PFAM:PF00320 | PFAM:PF06200 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00344 | PFscan:PS50114 |
| PFscan:PS51017 | PFscan:PS51320 | PANTHER:PTHR10071 | PANTHER:PTHR10071:SF282 | UniProt:Q8GXL7 | SMART:SM00401 |
| SMART:SM00979 | SUPFAM:SSF57716 | InterPro:Tify_dom | UniParc:UPI00000A1D8B | Symbol:ZML1 | InterPro:Znf_GATA |
| InterPro:Znf_NHR/GATA | SEG:seg | : | : | : | : |
Description
GATA24GATA transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXL7]
Coordinates
chr3:+:7422036..7424905
Molecular Weight (calculated)
32884.6 Da
IEP (calculated)
6.796
GRAVY (calculated)
-0.853
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLHGRNGR MHIGVAQNPM HVQYEDHGLH HIDNENSMMD DHADGGMDEG VETDIPSHPG NSADNRGEVV DRGIENGDQL TLSFQGQVYV FDRVSPEKVQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG QFTSAKSSND DSGSTGSDWG
201: SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ
101: AVLLLLGGRE VPHTLPTTLG SPHQNNRVLG LSGTPQRLSV PQRLASLLRF REKRKGRNFD KTIRYTVRKE VALRMQRKKG QFTSAKSSND DSGSTGSDWG
201: SNQSWAVEGT ETQKPEVLCR HCGTSEKSTP MMRRGPDGPR TLCNACGLMW ANKGTLRDLS KVPPPQTPQH LSLNKNEDAN LEADQMMEVT GDISNTQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.