Factsheet for GSMUA_Achr2P04520_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P14370_001
GSMUA_Achr1P28110_001
GSMUA_Achr2P04520_001
GSMUA_Achr3P05620_001
GSMUA_Achr5P28120_001
GSMUA_Achr6P35730_001
GSMUA_Achr7P14640_001
GSMUA_Achr8P05350_001
GSMUA_Achr8P26280_001
GSMUA_Achr9P13870_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	GSMUA_Achr10P...	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr1P14370_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr1P28110_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr6P35730_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr7P14640_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr8P05350_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr8P26280_001	AT1G01260.1	21798944
AT1G51600.1	GSMUA_AchrUn_...	AT1G01260.1	21798944
AT1G51600.1	GSMUA_Achr10P...	AT2G02560.1	21798944
AT1G51600.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944
AT1G51600.1	GSMUA_Achr5P28120_001	AT5G58575.1	21798944
AT3G21175.1	GSMUA_Achr10P...	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr2P04520_001	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr3P05620_001	AT3G21175.1	21798944
AT3G21175.1	GSMUA_Achr9P13870_001	AT3G21175.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P05620_001	Banana	nucleus	60.49	39.2
GSMUA_Achr10P...	Banana	nucleus	72.84	36.31
GSMUA_Achr9P13870_001	Banana	nucleus	61.73	33.0
GSMUA_Achr7P08720_001	Banana	cytosol	32.1	31.9
Os02t0148500-01	Rice	nucleus	62.35	30.79
VIT_09s0054g00440.t01	Wine grape	nucleus	56.79	30.77
CDY50073	Canola	nucleus	52.47	29.51
AT3G21175.1	Thale cress	nucleus	53.7	29.29
AT1G51600.1	Thale cress	nucleus	54.32	29.14
Bra014292.1-P	Field mustard	nucleus	45.68	28.46
CDY46552	Canola	nucleus	45.68	28.35
GSMUA_Achr7P01650_001	Banana	nucleus	42.59	28.28
CDY19576	Canola	nucleus	51.85	28.09
Zm00001d036494_P001	Maize	nucleus	61.11	27.65
EER88899	Sorghum	nucleus	59.88	27.56
Zm00001d014656_P003	Maize	nucleus	59.26	26.82
KRH44616	Soybean	extracellular, vacuole	54.94	26.65
Bra031258.1-P	Field mustard	nucleus	51.85	26.17
TraesCS7B01G323600.1	Wheat	nucleus	61.73	25.64
TraesCS7D01G416000.2	Wheat	nucleus	61.73	25.64
CDY52949	Canola	nucleus	46.3	25.34
HORVU6Hr1G021570.1	Barley	nucleus	52.47	25.22
TraesCS7A01G423100.2	Wheat	nucleus	61.73	25.19
TraesCS6A01G118800.2	Wheat	nucleus	51.85	24.63
TraesCS6B01G146800.2	Wheat	nucleus	51.85	24.56
TraesCS6D01G108700.2	Wheat	nucleus	51.85	24.56
GSMUA_Achr10P...	Banana	nucleus	38.27	23.22
Bra023900.1-P	Field mustard	nucleus	50.62	22.59
CDY37312	Canola	cytosol, nucleus, plastid	50.62	22.34
CDY27538	Canola	nucleus	51.23	21.5
HORVU7Hr1G097840.6	Barley	nucleus	60.49	20.94

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr2G04520_001	EnsemblPlants:GSMUA_Achr2P04520_001
EnsemblPlants:GSMUA_Achr2T04520_001	InterPro:IPR000679	InterPro:IPR010402	InterPro:IPR013088	UniProt:M0S543	PFAM:PF00320
PFAM:PF06203	ScanProsite:PS00344	PFscan:PS50114	PFscan:PS51017	PANTHER:PTHR10071	PANTHER:PTHR10071:SF296
SMART:SM00401	SUPFAM:SSF57716	UniParc:UPI00029691D9	InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg

Description

GATA transcription factor 25, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G04520_001]

Coordinates

chr2:-:9917025..9922605

Molecular Weight (calculated)

17691.9 Da

IEP (calculated)

10.790

GRAVY (calculated)

-0.858

Length

162 amino acids

Sequence
(BLAST)

001: MNVPHRVASL MRFREKRKER NFEKKIRYTV RKEVALRMQR NRGQFTSSKS KTEDSTGGAT TSDANQNWGS PENKIPAASA CHHCGINAKS TPMMRRGPDG
101: PRTLCNACGL VWANKGIMRD LSKNPSPAIL NASPEPKEGQ NNSAEAAISQ SIAVAANGHD TS

Best Arabidopsis Sequence Match ( AT1G51600.1 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.