Factsheet for Bra014292.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006753.1-P
Bra014106.1-P
Bra023900.1-P
Bra024815.1-P
Bra026586.1-P
Bra031258.1-P
Bra033273.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51600.1	Bra033273.1-P	AT1G01260.1	21798944
AT1G51600.1	Bra024815.1-P	AT2G02560.1	21798944
AT1G51600.1	Bra026586.1-P	AT2G02560.1	21798944
AT1G51600.1	Bra014106.1-P	AT2G47450.1	21798944
AT1G51600.1	Bra023900.1-P	AT3G21175.1	21798944
AT1G51600.1	Bra031258.1-P	AT3G21175.1	21798944
AT1G51600.1	Bra006753.1-P	AT5G58575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52949	Canola	nucleus	76.54	67.23
AT1G51600.1	Thale cress	nucleus	72.31	62.25
Bra031258.1-P	Field mustard	nucleus	59.23	47.98
GSMUA_Achr2P04520_001	Banana	nucleus	28.46	45.68
GSMUA_Achr3P05620_001	Banana	nucleus	41.92	43.6
VIT_09s0054g00440.t01	Wine grape	nucleus	48.85	42.47
KRH44616	Soybean	extracellular, vacuole	54.23	42.22
GSMUA_Achr9P13870_001	Banana	nucleus	46.54	39.93
Bra023900.1-P	Field mustard	nucleus	52.69	37.74
Bra013805.1-P	Field mustard	nucleus	36.92	35.69
Bra019227.1-P	Field mustard	nucleus	35.38	35.25
GSMUA_Achr10P...	Banana	nucleus	42.31	33.85
Os02t0148500-01	Rice	nucleus	42.69	33.84
EER88899	Sorghum	nucleus	43.85	32.39
TraesCS6A01G118800.2	Wheat	nucleus	41.92	31.96
Zm00001d036494_P001	Maize	nucleus	43.46	31.56
Zm00001d014656_P003	Maize	nucleus	42.69	31.01
HORVU6Hr1G021570.1	Barley	nucleus	40.0	30.86
TraesCS6B01G146800.2	Wheat	nucleus	40.38	30.7
TraesCS6D01G108700.2	Wheat	nucleus	40.38	30.7
TraesCS7B01G323600.1	Wheat	nucleus	45.38	30.26
TraesCS7D01G416000.2	Wheat	nucleus	45.0	30.0
TraesCS7A01G423100.2	Wheat	nucleus	45.38	29.72
HORVU7Hr1G097840.6	Barley	nucleus	45.0	25.0

Protein Annotations

MapMan:15.5.1.3	Gene3D:3.30.50.10	EnsemblPlantsGene:Bra014292	EnsemblPlants:Bra014292.1	EnsemblPlants:Bra014292.1-P	InterPro:CCT_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR000679	InterPro:IPR010399	InterPro:IPR010402	InterPro:IPR013088	UniProt:M4DCS5	PFAM:PF00320
PFAM:PF06200	PFAM:PF06203	ScanProsite:PS00344	PFscan:PS51017	PFscan:PS51320	PANTHER:PTHR10071
PANTHER:PTHR10071:SF282	SMART:SM00401	SMART:SM00979	SUPFAM:SSF57716	InterPro:Tify_dom	UniParc:UPI0002545DCF
InterPro:Znf_GATA	InterPro:Znf_NHR/GATA	SEG:seg	:	:	:

Description

AT1G51600 (E=2e-114) ZML2, TIFY2A | TIFY2A; sequence-specific DNA binding / transcription factor/ zinc ion binding

Coordinates

chrA08:-:1879987..1881184

Molecular Weight (calculated)

28267.1 Da

IEP (calculated)

7.179

GRAVY (calculated)

-0.766

Length

260 amino acids

Sequence
(BLAST)

001: MDDGELHGSN GRMHIGETQD PLHHVHYGHH ALQHIHNGSG MVDDHADTGG GGGMSDGVDT DVPSHPGIIT DNRGEVVDRG SEQGDQLTLS FQGQVYVFDS
101: VLPEKVQAVL LLLGGREVPQ APPAGLGASH QNNRGLPGTP QRCSMPQRLA SLVRFREKRK ERNFDKKIRY TVRKEVALRM QRNKGQFTSA KSNNGEAAAD
201: GSSWESSQTW AIEGSEAQNQ EISCRHCGIG EKSTPMMRRG PEGPRTLCNA CGLMWANKAS

Best Arabidopsis Sequence Match ( AT1G51600.2 )
(BLAST)

001: MDDLHGSNAR MHIREAQDPM HVQFEHHALH HIHNGSGMVD DQADDGNAGG MSEGVETDIP SHPGNVTDNR GEVVDRGSEQ GDQLTLSFQG QVYVFDSVLP
101: EKVQAVLLLL GGRELPQAAP PGLGSPHQNN RVSSLPGTPQ RFSIPQRLAS LVRFREKRKG RNFDKKIRYT VRKEVALRMQ RNKGQFTSAK SNNDEAASAG
201: SSWGSNQTWA IESSEAQHQE ISCRHCGIGE KSTPMMRRGP AGPRTLCNAC GLMWANKGAF RDLSKASPQT AQNLPLNKNE DANLETDHQI MITVANDISN
301: SQ

Arabidopsis Description

GATA28GATA transcription factor 28 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.