Factsheet for Bra014106.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000729.1-P
Bra002831.1-P
Bra004937.1-P
Bra009499.1-P
Bra014106.1-P
Bra026145.1-P
Bra028057.1-P
Bra028809.1-P
Bra028941.1-P
Bra035611.1-P
Bra035669.1-P
Bra038815.1-P
Bra039315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	Bra026145.1-P	AT1G15310.1	20828566
AT2G47450.1	Bra028057.1-P	AT1G34430.1	21798944
AT2G47450.1	Bra038815.1-P	AT2G18710.1	14517205
AT2G47450.1	Bra035669.1-P	AT2G28800.1	14517205
AT2G47450.1	Bra035669.1-P	AT2G28800.1	20828566
AT2G47450.1	Bra004937.1-P	AT2G45770.1	14517205
AT2G47450.1	Bra039315.1-P	AT2G45770.1	14517205
AT2G47450.1	Bra004937.1-P	AT2G45770.1	20828566
AT2G47450.1	Bra039315.1-P	AT2G45770.1	20828566
AT2G47450.1	Bra014106.1-P	AT2G47450.1	10480939
AT2G47450.1	Bra014106.1-P	AT2G47450.1	11306572
AT2G47450.1	Bra000729.1-P	AT4G10930.1	21798944
AT2G47450.1	Bra009499.1-P	AT5G03940.1	10480939
AT2G47450.1	Bra028809.1-P	AT5G03940.1	10480939
AT2G47450.1	Bra009499.1-P	AT5G03940.1	11306572
AT2G47450.1	Bra028809.1-P	AT5G03940.1	11306572
AT2G47450.1	Bra009499.1-P	AT5G03940.1	14517205
AT2G47450.1	Bra028809.1-P	AT5G03940.1	14517205
AT2G47450.1	Bra009499.1-P	AT5G03940.1	15292240
AT2G47450.1	Bra028809.1-P	AT5G03940.1	15292240
AT2G47450.1	Bra009499.1-P	AT5G03940.1	15632183
AT2G47450.1	Bra028809.1-P	AT5G03940.1	15632183
AT2G47450.1	Bra009499.1-P	AT5G03940.1	16678173
AT2G47450.1	Bra028809.1-P	AT5G03940.1	16678173
AT2G47450.1	Bra002831.1-P	AT5G56250.1	21798944
AT2G47450.1	Bra028941.1-P	AT5G56250.1	21798944
AT2G47450.1	Bra035611.1-P	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70592	Canola	plastid	98.42	98.42
AT2G47450.1	Thale cress	plastid	72.37	73.73
KRG92072	Soybean	cytosol	17.63	61.47
VIT_03s0038g03560.t01	Wine grape	plastid	55.79	56.84
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	53.68	55.43
KRH29099	Soybean	plastid	55.53	55.24
PGSC0003DMT400003274	Potato	plastid	52.89	54.03
OQU93303	Sorghum	mitochondrion, plastid	49.47	49.34
Zm00001d027518_P001	Maize	plastid	48.95	48.69
Os03t0131900-01	Rice	plastid	48.42	47.42
TraesCS5A01G498700.1	Wheat	mitochondrion	48.16	46.8
TraesCS4D01G323400.1	Wheat	plastid	47.63	46.17
TraesCS4B01G326700.1	Wheat	plastid	47.63	46.06

Protein Annotations

Gene3D:1.25.40.20	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf
EnsemblPlantsGene:Bra014106	EnsemblPlants:Bra014106.1	EnsemblPlants:Bra014106.1-P	InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom
InterPro:Chromo_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019904	GO:GO:0030674	GO:GO:0032991
GO:GO:0042802	GO:GO:0043234	GO:GO:0045038	GO:GO:0070208	GO:GO:0080085	GO:GO:0097718
InterPro:IPR000953	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	UniProt:M4DC93	PFAM:PF00385
PFAM:PF13857	PFscan:PS50013	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF11
SMART:SM00248	SMART:SM00298	SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI0002546909	SEG:seg

Description

AT2G47450 (E=7e-149) CAO, CPSRP43 | CAO (CHAOS); chromatin binding

Coordinates

chrA08:-:3425657..3426799

Molecular Weight (calculated)

42213.4 Da

IEP (calculated)

4.287

GRAVY (calculated)

-0.428

Length

380 amino acids

Sequence
(BLAST)

001: MDTTSLVINH RQSLSRIIKL PHVPKSYAFS SFQSFQTRQL LNKQLSFRAT SPAAVQRDNY ETASFVEDDD ESYGEVNRII GSRMAAGGGG AAMEYLIEWK
101: DGHSPSWVPS SYIAADVVSE YETPWWTAAR KADDQALAQL LESSEGRRDA NTVDENGRTA LLFVAGLGSD KCVRLLSEAG ADLDHRDIRG GLTALHMAAG
201: YVQPDAVAAL VELGADAEVE DERGLTPLEL AREILKTTPK GNPMQFGRRI GLEKVISILE DQVFEYAEVE EILEKRGRGK DVEYLVKWKD GGDCDWVKGV
301: HVAEDVVKDY EAGLEYAVAE KVMGKRMGDD GNTEYLVKWT DMADATWEPE ENVDISLVQL YEQEEEAQPV NELELGIIKE

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.