Factsheet for PGSC0003DMT400003274

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001063
PGSC0003DMT400001674
PGSC0003DMT400003274
PGSC0003DMT400022884
PGSC0003DMT400023831
PGSC0003DMT400056953
PGSC0003DMT400070672
PGSC0003DMT400071384
PGSC0003DMT400073698

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	PGSC0003DMT400001674	AT1G15310.1	20828566
AT2G47450.1	PGSC0003DMT400073698	AT1G15310.1	20828566
AT2G47450.1	PGSC0003DMT400023831	AT1G34430.1	21798944
AT2G47450.1	PGSC0003DMT400070672	AT2G18710.1	14517205
AT2G47450.1	PGSC0003DMT400001063	AT2G28800.1	14517205
AT2G47450.1	PGSC0003DMT400001063	AT2G28800.1	20828566
AT2G47450.1	PGSC0003DMT400071384	AT2G45770.1	14517205
AT2G47450.1	PGSC0003DMT400071384	AT2G45770.1	20828566
AT2G47450.1	PGSC0003DMT400003274	AT2G47450.1	10480939
AT2G47450.1	PGSC0003DMT400003274	AT2G47450.1	11306572
AT2G47450.1	PGSC0003DMT400022884	AT5G03940.1	10480939
AT2G47450.1	PGSC0003DMT400022884	AT5G03940.1	11306572
AT2G47450.1	PGSC0003DMT400022884	AT5G03940.1	14517205
AT2G47450.1	PGSC0003DMT400022884	AT5G03940.1	15292240
AT2G47450.1	PGSC0003DMT400022884	AT5G03940.1	15632183
AT2G47450.1	PGSC0003DMT400022884	AT5G03940.1	16678173
AT2G47450.1	PGSC0003DMT400056953	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	92.74	93.75
VIT_03s0038g03560.t01	Wine grape	plastid	65.05	64.88
KRG92072	Soybean	cytosol	18.55	63.3
KRH29099	Soybean	plastid	61.56	59.95
AT2G47450.1	Thale cress	plastid	55.11	54.96
Bra014106.1-P	Field mustard	plastid	54.03	52.89
CDX77337	Canola	plastid	54.03	52.89
CDY70592	Canola	plastid	54.03	52.89
OQU93303	Sorghum	mitochondrion, plastid	48.92	47.77
Os03t0131900-01	Rice	plastid	49.46	47.42
Zm00001d027518_P001	Maize	plastid	48.66	47.38
TraesCS5A01G498700.1	Wheat	mitochondrion	48.66	46.29
TraesCS4D01G323400.1	Wheat	plastid	48.39	45.92
TraesCS4B01G326700.1	Wheat	plastid	48.12	45.55

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:102601192	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0045038	GO:GO:0080085	InterPro:IPR000953	InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770
UniProt:M0ZLC9	PFAM:PF00385	PFAM:PF12796	EnsemblPlantsGene:PGSC0003DMG400001299	PGSC:PGSC0003DMG400001299	EnsemblPlants:PGSC0003DMT400003274
PFscan:PS50013	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF11	SMART:SM00248
SMART:SM00298	SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI0002969346	RefSeq:XP_006338501.1	SEG:seg

Description

Ankyrin repeat domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001299]

Coordinates

chr2:-:46622150..46623554

Molecular Weight (calculated)

41779.0 Da

IEP (calculated)

4.220

GRAVY (calculated)

-0.492

Length

372 amino acids

Sequence
(BLAST)

001: MDALFVNSSL SRLKLKLSSQ FPTFSPMPHQ SYLPLKKLNS SNNLPLVFAT LQNQQQQAAA VAEEGRKEFE DYDADETYGE VNKIIGSRAI EGGKGMEYLI
101: EWKDEHAPTW VPSNFIAQDV VAEYETPWWN AAKKPDESAL RQLIEAEDGR DVDAVDDDGR TALLFVSGLG SEPCVKLLAE AGADVNYRDR SGGLTALHMA
201: AGYVKPGVAK LLIELGADPE VQDYRGQTPL SLARMVLNQT PKGNPMQFAR RLGLENVIRV LEDAIFEYAQ VEEILEKRGK GENVEYLVKW KDGEDNEWVK
301: AWLISEDLVR DFEAGLEYAE AECILEKREG EGGKDEYLVK WTDIEEATWE PEENVDPLLI EDFEKGQQKV VS

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.