Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 2
- plastid 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29099 | Soybean | plastid | 81.65 | 23.3 |
| VIT_03s0038g03560.t01 | Wine grape | plastid | 65.14 | 19.03 |
| AT2G47450.1 | Thale cress | plastid | 64.22 | 18.77 |
| Solyc02g087400.1.1 | Tomato | cytosol, mitochondrion | 63.3 | 18.75 |
| PGSC0003DMT400003274 | Potato | plastid | 63.3 | 18.55 |
| Bra014106.1-P | Field mustard | plastid | 61.47 | 17.63 |
| CDX77337 | Canola | plastid | 61.47 | 17.63 |
| CDY70592 | Canola | plastid | 61.47 | 17.63 |
| OQU93303 | Sorghum | mitochondrion, plastid | 51.38 | 14.7 |
| Zm00001d027518_P001 | Maize | plastid | 50.46 | 14.4 |
| Os03t0131900-01 | Rice | plastid | 47.71 | 13.4 |
| TraesCS5A01G498700.1 | Wheat | mitochondrion | 46.79 | 13.04 |
| TraesCS4D01G323400.1 | Wheat | plastid | 46.79 | 13.01 |
| TraesCS4B01G326700.1 | Wheat | plastid | 46.79 | 12.98 |
Protein Annotations
| Gene3D:2.40.50.40 | MapMan:23.1.7.3.1 | EMBL:ACUP02012727 | InterPro:CPSRP43 | InterPro:Chromo-like_dom_sf | InterPro:Chromo/chromo_shadow_dom |
| EnsemblPlantsGene:GLYMA_20G189400 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0045038 |
| GO:GO:0080085 | InterPro:IPR000953 | UniProt:K7N4E3 | EnsemblPlants:KRG92072 | ProteinID:KRG92072 | ProteinID:KRG92072.1 |
| PANTHER:PTHR24128 | PANTHER:PTHR24128:SF11 | SUPFAM:SSF54160 | UniParc:UPI00023DC26C | : | : |
Description
hypothetical protein
Coordinates
chr20:-:42787753..42788121
Molecular Weight (calculated)
11884.3 Da
IEP (calculated)
4.364
GRAVY (calculated)
-0.134
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGYVRPGA AKVLLDLGAD PEVADEHGRM ALDLVREILM VTPKGNPMQF GLRIGLEGAV FEYAEVQEIL ERRGKGENLE YLVRWKDGAN EWVGEVCGGG
101: FGEILPGWP
101: FGEILPGWP
001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE
Arabidopsis Description
CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.