CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44479	Soybean	cytosol	98.38	98.38
KRH23593	Soybean	cytosol	97.58	96.6
KRH09713	Soybean	cytosol	97.17	96.39
Solyc12g042740.1.1	Tomato	cytosol	94.34	93.59
VIT_09s0002g07290.t01	Wine grape	cytosol	93.54	93.54
PGSC0003DMT400073698	Potato	cytosol	93.13	92.38
GSMUA_Achr8P03120_001	Banana	cytosol	92.53	92.15
Os01t0772800-01	Rice	plasma membrane	91.11	90.93
EES01544	Sorghum	cytosol	91.11	90.93
CDY16472	Canola	cytosol	71.31	90.05
PGSC0003DMT400001674	Potato	cytosol	90.3	89.94
Zm00001d012652_P003	Maize	extracellular	90.71	89.8
Zm00001d043303_P001	Maize	cytosol	89.29	89.47
AT1G48900.1	Thale cress	cytosol	88.89	88.89
Bra014161.1-P	Field mustard	cytosol	87.47	87.3
CDX77276	Canola	cytosol	87.27	87.1
CDY40616	Canola	cytosol	86.87	86.87
CDX93702	Canola	cytosol	86.87	86.87
Bra018760.1-P	Field mustard	cytosol	86.87	86.87
TraesCS1B01G340600.1	Wheat	golgi, plastid	83.64	83.3
TraesCS1A01G327200.1	Wheat	cytosol	83.64	83.3
HORVU2Hr1G020570.1	Barley	plasma membrane	83.43	83.1
TraesCS1D01G329300.1	Wheat	cytosol	82.63	82.29
AT1G15310.1	Thale cress	cytosol	79.6	82.25
HORVU3Hr1G075590.1	Barley	cytosol	31.72	81.77
HORVU1Hr1G077990.4	Barley	cytosol	82.83	81.35
Bra026145.1-P	Field mustard	cytosol	76.77	79.33
CDY36546	Canola	cytosol	76.77	79.33
HORVU6Hr1G029680.1	Barley	cytosol	30.71	79.17
HORVU5Hr1G019120.2	Barley	cytosol	30.71	79.17
AT5G49500.1	Thale cress	cytosol	79.39	79.07
CDY39632	Canola	cytosol	76.57	78.96
HORVU2Hr1G125480.2	Barley	cytosol	31.11	78.17
HORVU7Hr1G036330.1	Barley	cytosol	37.58	77.18
Solyc03g116810.2.1	Tomato	nucleus	90.71	76.1
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	74.34	76.03
Os05t0509500-01	Rice	plasma membrane	74.14	75.98
TraesCS3A01G322800.1	Wheat	mitochondrion	73.94	75.62
HORVU2Hr1G097520.1	Barley	cytosol	33.74	75.23
TraesCS3B01G342900.1	Wheat	cytosol	73.54	75.21
TraesCS1A01G327300.1	Wheat	cytosol	74.34	74.64
TraesCS1B01G340700.1	Wheat	cytosol	74.14	74.29
EES19782	Sorghum	cytosol	71.52	73.44
CDY10656	Canola	cytosol	28.69	72.45
Zm00001d038661_P001	Maize	cytosol	69.09	70.95
KXG37974	Sorghum	cytosol	60.2	66.82
KXG37972	Sorghum	cytosol	59.8	66.37
KXG34125	Sorghum	cytosol	57.58	57.34
CDY46694	Canola	cytosol	27.47	43.87
CDY17067	Canola	cytosol, nucleus	28.48	43.65
AT5G66970.1	Thale cress	cytosol	14.55	41.14
Bra014039.1-P	Field mustard	cytosol	34.14	41.12
KRH67940	Soybean	plastid	26.67	23.36
KRH48224	Soybean	plastid	16.36	21.77
KRH65131	Soybean	plastid	16.16	21.51
KRH72313	Soybean	cytosol	12.12	19.48
KRH54944	Soybean	endoplasmic reticulum	17.17	13.64
KRH03040	Soybean	endoplasmic reticulum	16.77	13.26

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:100811698	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02004150	EnsemblPlantsGene:GLYMA_07G029200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047	GO:GO:0048500	UniProt:I1KGZ5
InterPro:IPR036891	EnsemblPlants:KRH47429	ProteinID:KRH47429	ProteinID:KRH47429.1	HAMAP:MF_00306	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom
InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI00023391B9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:2345294..2348623

Molecular Weight (calculated)

54941.4 Da

IEP (calculated)

9.609

GRAVY (calculated)

-0.272

Length

495 amino acids

Sequence
(BLAST)

001: MVLAELGGSI SRALQQMSNA TIIDEKVLND CLNDITRALL QSDVQFKLVR DMQTNIKNIV NLEDLAAGHN KRRIIQQAVF NELCKILDPG KPSFTPKKGK
101: TSVVMFVGLQ GSGKTTTCTK YAFYHQKKGW KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGVERFK QENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV VPMDQQPELL QKLSEGNFTL RIMYEQFQNL LKMGPISQVF SMLPGFSAEL MPKGREKESQ AKIKRYMTMM DSMTNEELDS SNPKLMNESR
401: MMRIARGSGR PVREVMEMLE EYKRLAKIWS KMKGLKIPKK GEMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSAKDMMGMF GGGGD

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.