Factsheet for Os01t0772800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01544	Sorghum	cytosol	96.57	96.57
Zm00001d012652_P003	Maize	extracellular	95.97	95.2
Zm00001d043303_P001	Maize	cytosol	94.15	94.53
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	90.93	91.11
KRH44479	Soybean	cytosol	90.93	91.11
KRH09713	Soybean	cytosol	90.52	89.98
KRH23593	Soybean	cytosol	90.32	89.6
Solyc12g042740.1.1	Tomato	cytosol	90.12	89.58
VIT_09s0002g07290.t01	Wine grape	cytosol	88.91	89.09
PGSC0003DMT400073698	Potato	cytosol	88.91	88.38
CDY16472	Canola	cytosol	68.35	86.48
PGSC0003DMT400001674	Potato	cytosol	86.09	85.92
AT1G48900.1	Thale cress	cytosol	85.08	85.25
CDX77276	Canola	cytosol	83.67	83.67
Bra018760.1-P	Field mustard	cytosol	83.47	83.64
CDY40616	Canola	cytosol	83.47	83.64
CDX93702	Canola	cytosol	83.47	83.64
Bra014161.1-P	Field mustard	cytosol	83.27	83.27
HORVU3Hr1G075590.1	Barley	cytosol	31.85	82.29
HORVU5Hr1G019120.2	Barley	cytosol	31.45	81.25
HORVU6Hr1G029680.1	Barley	cytosol	31.45	81.25
HORVU2Hr1G125480.2	Barley	cytosol	31.85	80.2
HORVU7Hr1G036330.1	Barley	cytosol	38.91	80.08
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	77.82	79.75
Os05t0509500-01	Rice	plasma membrane	77.42	79.5
HORVU2Hr1G097520.1	Barley	cytosol	35.48	79.28
TraesCS3A01G322800.1	Wheat	mitochondrion	77.22	79.13
AT1G15310.1	Thale cress	cytosol	76.41	79.12
TraesCS3B01G342900.1	Wheat	cytosol	76.81	78.72
AT5G49500.1	Thale cress	cytosol	75.81	75.65
Bra026145.1-P	Field mustard	cytosol	72.98	75.57
CDY36546	Canola	cytosol	72.98	75.57
CDY39632	Canola	cytosol	72.98	75.42
Solyc03g116810.2.1	Tomato	nucleus	86.49	72.71
CDY10656	Canola	cytosol	27.42	69.39
GSMUA_Achr9P25680_001	Banana	cytosol	53.43	60.78
CDY46694	Canola	cytosol	27.42	43.87
CDY17067	Canola	cytosol, nucleus	28.23	43.34
Bra014039.1-P	Field mustard	cytosol	33.27	40.15
AT5G66970.1	Thale cress	cytosol	14.11	40.0
Os01t0958100-01	Rice	plastid	17.94	24.52
Os11t0153700-01	Rice	plastid	26.81	23.88
Os11t0153600-01	Rice	cytosol	10.08	22.83
Os11t0153800-01	Rice	nucleus	0.6	2.78

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	EntrezGene:4324712	InterPro:AAA+_ATPase
EMBL:AB114831	EMBL:AK120871	ProteinID:BAB89854.1	ProteinID:BAC03250.1	ProteinID:BAF06309.1	ProteinID:BAS74572.1
ProteinID:EEE55463.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0016787	GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306	EnsemblPlantsGene:Os01g0772800
EnsemblPlants:Os01t0772800-01	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	UniProt:Q8S1I8	SMART:SM00382	SMART:SM00962	SMART:SM00963
InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446
SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI000009FB2E
RefSeq:XP_015621502.1	SEG:seg	:	:	:	:

Description

Similar to Signal recognition particle 54 kDa protein 2 (SRP54). (Os01t0772800-01)

Coordinates

chr1:+:32652482..32656533

Molecular Weight (calculated)

54758.2 Da

IEP (calculated)

9.766

GRAVY (calculated)

-0.231

Length

496 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDEKVLSD CLNEISRALL QSDVQFKMVR DMQSNIKRIV NLETLAAGTN KRRIIQQAVF TELCNMLDPG KPSFTPKKGK
101: PCVVMFVGLQ GSGKTTTCTK YAYYHQRKGF KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGVERFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV SVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV VPTDQQPELL QKLSEGTFTL RLMYEQFQNI LKMGPIGQVF SMLPGFSSEL MPKGHEKESQ AKIKRYMTMM DSMTDGELDS TNPKLMTESR
401: ILRIARGSGR PVRDVVDMLE EYKRLAKIWS KMKGLKIPKK GEMSALSRNM NVQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSKEMGGMFG GMGGDK

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.