Factsheet for Solyc03g116810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001674	Potato	cytosol	83.22	98.79
Solyc12g042740.1.1	Tomato	cytosol	77.46	91.58
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	76.1	90.71
KRH44479	Soybean	cytosol	76.1	90.71
KRH09713	Soybean	cytosol	76.27	90.18
KRH23593	Soybean	cytosol	75.76	89.4
VIT_09s0002g07290.t01	Wine grape	cytosol	74.24	88.48
GSMUA_Achr8P03120_001	Banana	cytosol	73.9	87.73
CDY16472	Canola	cytosol	57.8	86.99
EES01544	Sorghum	cytosol	72.88	86.69
Os01t0772800-01	Rice	plasma membrane	72.71	86.49
AT1G48900.1	Thale cress	cytosol	72.37	86.26
Zm00001d012652_P003	Maize	extracellular	73.05	86.2
Zm00001d043303_P001	Maize	cytosol	71.86	85.83
CDY40616	Canola	cytosol	71.69	85.45
Bra018760.1-P	Field mustard	cytosol	71.69	85.45
CDX93702	Canola	cytosol	71.69	85.45
Bra014161.1-P	Field mustard	cytosol	71.36	84.88
CDX77276	Canola	cytosol	71.19	84.68
TraesCS1B01G340600.1	Wheat	golgi, plastid	69.15	82.09
TraesCS1A01G327200.1	Wheat	cytosol	69.15	82.09
HORVU2Hr1G020570.1	Barley	plasma membrane	68.98	81.89
AT1G15310.1	Thale cress	cytosol	66.1	81.42
TraesCS1D01G329300.1	Wheat	cytosol	67.97	80.68
HORVU1Hr1G077990.4	Barley	cytosol	68.64	80.36
HORVU3Hr1G075590.1	Barley	cytosol	26.1	80.21
Bra026145.1-P	Field mustard	cytosol	64.75	79.75
CDY36546	Canola	cytosol	64.41	79.33
CDY39632	Canola	cytosol	64.41	79.17
HORVU5Hr1G019120.2	Barley	cytosol	25.59	78.65
HORVU6Hr1G029680.1	Barley	cytosol	25.59	78.65
AT5G49500.1	Thale cress	cytosol	65.25	77.46
HORVU2Hr1G125480.2	Barley	cytosol	25.76	77.16
HORVU7Hr1G036330.1	Barley	cytosol	31.02	75.93
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	61.53	75.0
Os05t0509500-01	Rice	plasma membrane	61.02	74.53
CDY10656	Canola	cytosol	24.58	73.98
TraesCS3A01G322800.1	Wheat	mitochondrion	60.68	73.97
TraesCS3B01G342900.1	Wheat	cytosol	60.51	73.76
HORVU2Hr1G097520.1	Barley	cytosol	27.63	73.42
EES19782	Sorghum	cytosol	59.83	73.24
TraesCS1A01G327300.1	Wheat	cytosol	61.19	73.23
TraesCS1B01G340700.1	Wheat	cytosol	61.02	72.87
Zm00001d038661_P001	Maize	cytosol	57.8	70.75
KXG37974	Sorghum	cytosol	49.83	65.92
KXG37972	Sorghum	cytosol	49.49	65.47
KXG34125	Sorghum	cytosol	47.29	56.14
CDY17067	Canola	cytosol, nucleus	23.56	43.03
CDY46694	Canola	cytosol	22.54	42.9
AT5G66970.1	Thale cress	cytosol	12.37	41.71
Bra014039.1-P	Field mustard	cytosol	28.47	40.88
Solyc09g009940.2.1	Tomato	plastid	22.2	23.1
Solyc01g091580.2.1	Tomato	plastid	13.56	21.74
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	14.58	13.89

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529
GO:GO:0045047	GO:GO:0048500	InterPro:IPR036891	UniProt:K4BLI3	HAMAP:MF_00306	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom
InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	EnsemblPlantsGene:Solyc03g116810.2	EnsemblPlants:Solyc03g116810.2.1	TIGRFAMs:TIGR01425	UniParc:UPI00027690FF	SEG:seg

Description

Signal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:K4BLI3]

Coordinates

chr3:+:66074171..66082120

Molecular Weight (calculated)

65650.7 Da

IEP (calculated)

8.870

GRAVY (calculated)

-0.119

Length

590 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALQQMSNA TIIDEKVLNE CLNEITRALL QADVQFKLVR DMSTNIKKIV NLEDLAAGHN KRRIIQQAVY NELCKILDPG KPAFTLKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYHHQKRGW KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVDGVETFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFRQSV AVGAVIVTKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDL
301: SGLVNKIQDV VPMDQQPELL QKLSEGHFTL RIMYEQFQSM LKMGPLGQVF SMLPGFSAEM MPQGREKESQ AKFKRYMTMM DSMTDEELDS TNPKILTESR
401: IMRIARGSGR LVHEVMEMLE EYKRLAKIFS KMKGLKIPKK GDMSSLSRNM NAQNMSKVLP PQMLKQIGGM GGLQNLMKQM GSAKDMMGMF GGGGGEMKHC
501: MVLMLHFMLC LYDMISSYAA CKFICLLDVT NEQPSCYFNL CRYNCTNSQL HKFSIAHCIE APMSWSFING VWFSAVSGYI AVQWKALFQT

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.