Factsheet for TraesCS1D01G329300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G020570.1	Barley	plasma membrane	98.39	98.39
TraesCS1B01G340600.1	Wheat	golgi, plastid	98.19	98.19
TraesCS1A01G327200.1	Wheat	cytosol	98.19	98.19
HORVU1Hr1G077990.4	Barley	cytosol	97.79	96.43
KRH09713	Soybean	cytosol	83.1	82.77
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	82.29	82.63
KRH44479	Soybean	cytosol	81.89	82.22
KRH23593	Soybean	cytosol	82.7	82.2
Solyc12g042740.1.1	Tomato	cytosol	82.5	82.16
VIT_09s0002g07290.t01	Wine grape	cytosol	81.69	82.02
PGSC0003DMT400073698	Potato	cytosol	81.69	81.36
CDY16472	Canola	cytosol	63.98	81.12
PGSC0003DMT400001674	Potato	cytosol	80.68	80.68
AT1G48900.1	Thale cress	cytosol	79.28	79.6
Os05t0509500-01	Rice	plasma membrane	77.26	79.5
Bra014161.1-P	Field mustard	cytosol	79.07	79.23
CDX77276	Canola	cytosol	79.07	79.23
CDY40616	Canola	cytosol	78.07	78.38
Bra018760.1-P	Field mustard	cytosol	78.07	78.38
CDX93702	Canola	cytosol	78.07	78.38
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	74.65	76.65
AT1G15310.1	Thale cress	cytosol	72.64	75.37
EES19782	Sorghum	cytosol	72.23	74.48
CDY39632	Canola	cytosol	71.03	73.54
CDY36546	Canola	cytosol	70.83	73.49
Bra026145.1-P	Field mustard	cytosol	70.62	73.28
Zm00001d038661_P001	Maize	cytosol	70.83	73.03
AT5G49500.1	Thale cress	cytosol	71.23	71.23
Solyc03g116810.2.1	Tomato	nucleus	80.68	67.97
CDY10656	Canola	cytosol	26.56	67.35
KXG37974	Sorghum	cytosol	60.16	67.04
KXG37972	Sorghum	cytosol	59.96	66.82
KXG34125	Sorghum	cytosol	58.75	58.75
GSMUA_Achr9P25680_001	Banana	cytosol	50.3	57.34
CDY17067	Canola	cytosol, nucleus	27.16	41.8
AT5G66970.1	Thale cress	cytosol	14.69	41.71
CDY46694	Canola	cytosol	25.96	41.61
Bra014039.1-P	Field mustard	cytosol	32.19	38.93
TraesCS4D01G115600.1	Wheat	plastid	26.76	24.01
TraesCS4D01G115500.1	Wheat	plastid	25.35	22.74
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	17.1	14.03
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	17.71	13.62

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891
HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP/SRP_N
InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk	SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540
InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	EnsemblPlantsGene:TraesCS1D01G329300	EnsemblPlants:TraesCS1D01G329300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:420553765..420567251

Molecular Weight (calculated)

54487.0 Da

IEP (calculated)

9.847

GRAVY (calculated)

-0.196

Length

497 amino acids

Sequence
(BLAST)

001: MVLAELGGSI SRALARMSSA TVVDENVLGE CLNEISRALL QSDVQFKMVR DMQTNIRKIV NLETLAAGTN KRRIIQQAVF TELCNMLDPG KPAFTPKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYYHQRKGF KPSLVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGLERFR KDNSDLIIID TSGRHKQEAA
201: LFEEMRQVAE ATKPDLVIFV MDGSIGQAAF DQAQAFKQSA SVGAVIITKL DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEIFDVKPF VSRLLGMGDL
301: SGLMDKIQDV MPADQQPELL AKLAEGTFTL RLLYDQFQNL LKMGPIGQVF SMLPGFSSEL MPKGHEKEGQ AKIKRYMTIM DSMTAAELDS TNPKLMTESR
401: IIRIARGSGR QIRDVMDMLE EYKRLAKMWS KMKGLKMPKN GKMSDLSQNL NIQQMTKALP PQVLKQMGGM GGLQALMKQM GGKDMSKMLG GMGLGGD

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.