CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46694	Canola	cytosol	95.98	100.0
Bra014039.1-P	Field mustard	cytosol	98.14	77.13
HORVU2Hr1G125480.2	Barley	cytosol	28.79	47.21
HORVU6Hr1G029680.1	Barley	cytosol	27.55	46.35
HORVU5Hr1G019120.2	Barley	cytosol	27.55	46.35
HORVU3Hr1G075590.1	Barley	cytosol	22.29	37.5
HORVU7Hr1G036330.1	Barley	cytosol	27.55	36.93
CDY16472	Canola	cytosol	40.87	33.67
KXG37974	Sorghum	cytosol	40.56	29.37
KXG37972	Sorghum	cytosol	40.56	29.37
TraesCS3B01G342900.1	Wheat	cytosol	43.96	29.34
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	43.65	29.13
KRH44479	Soybean	cytosol	43.96	28.69
Solyc12g042740.1.1	Tomato	cytosol	44.27	28.66
PGSC0003DMT400073698	Potato	cytosol	44.27	28.66
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	43.65	28.48
EES19782	Sorghum	cytosol	42.41	28.42
HORVU2Hr1G097520.1	Barley	cytosol	19.5	28.38
Os05t0509500-01	Rice	plasma membrane	42.41	28.36
Os01t0772800-01	Rice	plasma membrane	43.34	28.23
VIT_09s0002g07290.t01	Wine grape	cytosol	43.03	28.08
EES01544	Sorghum	cytosol	43.03	28.02
GSMUA_Achr8P03120_001	Banana	cytosol	43.03	27.97
Zm00001d012652_P003	Maize	extracellular	43.03	27.8
PGSC0003DMT400001674	Potato	cytosol	42.72	27.77
TraesCS1B01G340700.1	Wheat	cytosol	42.41	27.73
CDY40616	Canola	cytosol	42.41	27.68
CDX93702	Canola	cytosol	42.41	27.68
KRH09713	Soybean	cytosol	42.72	27.66
CDX77276	Canola	cytosol	42.41	27.62
KRH23593	Soybean	cytosol	42.72	27.6
Zm00001d043303_P001	Maize	cytosol	42.11	27.53
CDY39632	Canola	cytosol	40.87	27.5
AT5G66970.1	Thale cress	cytosol	14.86	27.43
TraesCS1B01G340600.1	Wheat	golgi, plastid	42.11	27.36
CDY36546	Canola	cytosol	40.56	27.35
TraesCS1D01G329300.1	Wheat	cytosol	41.8	27.16
HORVU2Hr1G020570.1	Barley	plasma membrane	41.8	27.16
Zm00001d038661_P001	Maize	cytosol	39.94	26.76
HORVU1Hr1G077990.4	Barley	cytosol	41.49	26.59
KXG34125	Sorghum	cytosol	38.39	24.95
Solyc03g116810.2.1	Tomato	nucleus	43.03	23.56
TraesCS1A01G075500.1	Wheat	golgi	26.32	21.2
GSMUA_Achr9P25680_001	Banana	cytosol	28.48	21.1
CDY10656	Canola	cytosol	10.84	17.86
CDY18901	Canola	plastid	15.48	13.85
CDX74765	Canola	plastid	15.48	13.59
CDY27360	Canola	plastid	14.86	13.08
CDY37064	Canola	plastid	14.86	13.04
CDY41424	Canola	plastid	21.05	12.04
CDX70273	Canola	plastid	21.05	12.01
CDY04905	Canola	plastid	20.12	11.52
CDY14166	Canola	plastid	19.81	11.35
CDY39221	Canola	cytosol, endoplasmic reticulum	16.41	8.62
CDX72255	Canola	cytosol, endoplasmic reticulum	16.41	8.6
CDY28196	Canola	endoplasmic reticulum	16.41	8.52
CDX68673	Canola	extracellular	16.41	8.44
CDY14165	Canola	plastid	2.79	4.0

Protein Annotations

Gene3D:1.20.120.140	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FWI3	UniProt:A0A078FWI3	EnsemblPlants:CDY17067
ProteinID:CDY17067	ProteinID:CDY17067.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0016787	GO:GO:0048500	EnsemblPlantsGene:GSBRNA2T00095053001	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02978
PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00962	InterPro:SRP54	InterPro:SRP54_GTPase_dom	SUPFAM:SSF52540
InterPro:Signal_recog_particle_SRP54_M	UniParc:UPI0004EED476	SEG:seg	:	:	:

Description

BnaA08g04310DBnaA08g04310D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078FWI3]

Coordinates

chrLK032069:-:766320..767836

Molecular Weight (calculated)

36529.4 Da

IEP (calculated)

9.668

GRAVY (calculated)

-0.298

Length

323 amino acids

Sequence
(BLAST)

001: KSASIQGKNE SIVMFIGLQG SEKSYTCARY ARYHMTMGFK PALVCADTFA IDAFDLLKKA SKDKVPVYRS RKRDPAKIAS GGIAKLRKHN RDFIVVDTTS
101: RHTECFALLV EMRRLANAVK PDLVIFVIDG SVGKDAFEQA RAFRESFPAG VAIVTKINTY PKSFGALAAV AAAECPMIYS TKGEKGEEFK VFEAESFVRQ
201: LMPANQDHER EDNTPEFAYT LRKMHAYFSK ACQGKVLSGP RPLVDIPTMK LYIQIMDNMT SEELEKSEIS KERMVHLAEQ SNVDVIQVVG MMTVYKRKAK
301: AWLEIEERMG KLNSIYNKWY LQK

Best Arabidopsis Sequence Match ( AT1G15310.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK

Arabidopsis Description

SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.