Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G036330.1 | Barley | cytosol | 77.03 | 70.95 |
| HORVU6Hr1G029680.1 | Barley | cytosol | 55.86 | 64.58 |
| HORVU5Hr1G019120.2 | Barley | cytosol | 55.86 | 64.58 |
| HORVU2Hr1G125480.2 | Barley | cytosol | 54.95 | 61.93 |
| CDY10656 | Canola | cytosol | 50.9 | 57.65 |
| TraesCS3B01G342900.1 | Wheat | cytosol | 90.99 | 41.74 |
| TraesCS3D01G308700.1 | Wheat | cytosol, mitochondrion | 90.54 | 41.53 |
| TraesCS3A01G322800.1 | Wheat | mitochondrion | 89.19 | 40.91 |
| AT5G66970.1 | Thale cress | cytosol | 28.83 | 36.57 |
| Zm00001d043303_P001 | Maize | cytosol | 79.73 | 35.83 |
| Os01t0772800-01 | Rice | plasma membrane | 79.28 | 35.48 |
| EES01544 | Sorghum | cytosol | 79.28 | 35.48 |
| Zm00001d012652_P003 | Maize | extracellular | 78.83 | 35.0 |
| HORVU2Hr1G020570.1 | Barley | plasma membrane | 77.48 | 34.61 |
| KRH47429 | Soybean | cytosol, endoplasmic reticulum, nucleus | 75.23 | 33.74 |
| HORVU1Hr1G077990.4 | Barley | cytosol | 76.58 | 33.73 |
| KRH09713 | Soybean | cytosol | 75.68 | 33.67 |
| KRH23593 | Soybean | cytosol | 75.68 | 33.6 |
| VIT_09s0002g07290.t01 | Wine grape | cytosol | 74.77 | 33.54 |
| KRH44479 | Soybean | cytosol | 74.77 | 33.54 |
| PGSC0003DMT400001674 | Potato | cytosol | 72.97 | 32.6 |
| Solyc12g042740.1.1 | Tomato | cytosol | 72.97 | 32.46 |
| CDY36546 | Canola | cytosol | 69.82 | 32.36 |
| PGSC0003DMT400073698 | Potato | cytosol | 72.52 | 32.26 |
| CDY39632 | Canola | cytosol | 69.37 | 32.08 |
| Bra026145.1-P | Field mustard | cytosol | 68.92 | 31.94 |
| AT1G15310.1 | Thale cress | cytosol | 68.92 | 31.94 |
| Bra018760.1-P | Field mustard | cytosol | 70.27 | 31.52 |
| AT1G48900.1 | Thale cress | cytosol | 69.82 | 31.31 |
| CDY40616 | Canola | cytosol | 69.82 | 31.31 |
| CDX93702 | Canola | cytosol | 69.82 | 31.31 |
| CDX77276 | Canola | cytosol | 69.82 | 31.25 |
| Bra014161.1-P | Field mustard | cytosol | 69.82 | 31.25 |
| HORVU3Hr1G075590.1 | Barley | cytosol | 26.58 | 30.73 |
| AT5G49500.1 | Thale cress | cytosol | 63.51 | 28.37 |
| Solyc03g116810.2.1 | Tomato | nucleus | 73.42 | 27.63 |
| GSMUA_Achr9P25680_001 | Banana | cytosol | 50.9 | 25.92 |
| CDY16472 | Canola | cytosol | 42.34 | 23.98 |
| Bra014039.1-P | Field mustard | cytosol | 38.29 | 20.68 |
| CDY17067 | Canola | cytosol, nucleus | 28.38 | 19.5 |
| CDY46694 | Canola | cytosol | 26.13 | 18.71 |
| HORVU3Hr1G110160.4 | Barley | mitochondrion | 26.13 | 14.54 |
| HORVU4Hr1G021950.4 | Barley | plastid | 31.08 | 12.43 |
| HORVU4Hr1G021960.1 | Barley | plastid | 30.18 | 11.94 |
| HORVU6Hr1G018280.1 | Barley | cytosol, endoplasmic reticulum | 23.87 | 8.37 |
Protein Annotations
| Gene3D:1.20.120.140 | MapMan:23.3.1.1.5 | Gene3D:3.40.50.300 | UniProt:A0A287J2V8 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016787 |
| GO:GO:0048500 | EnsemblPlantsGene:HORVU2Hr1G097520 | EnsemblPlants:HORVU2Hr1G097520.1 | InterPro:P-loop_NTPase | PFAM:PF00448 | PFAM:PF02881 |
| PANTHER:PTHR11564 | PANTHER:PTHR11564:SF5 | SMART:SM00962 | SMART:SM00963 | InterPro:SRP/SRP_N | InterPro:SRP54 |
| InterPro:SRP54_GTPase_dom | SUPFAM:SSF47364 | SUPFAM:SSF52540 | InterPro:Signal_recog_particl_SRP54_hlx | UniParc:UPI000B475597 | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:-:679427819..679439358
Molecular Weight (calculated)
24504.9 Da
IEP (calculated)
8.574
GRAVY (calculated)
-0.079
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: VVLAQLGGSL SRALARMTNA TVVDERVLGD CLNEITRALL HVDVQFDMVR DMQASVKCTV YLGALAAGTD KRRVIKTAVF DELCNMLDAG KPAFAPKKGK
101: SCVVMFVGLQ GSGKTTTCMK FAHYHQKIGF KPALVCADTF RAGAFDQLKQ NATKIMVPFY GSYMESDPVK IVVEGVERFR KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVRS NETRPGNICD GW
101: SCVVMFVGLQ GSGKTTTCMK FAHYHQKIGF KPALVCADTF RAGAFDQLKQ NATKIMVPFY GSYMESDPVK IVVEGVERFR KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVRS NETRPGNICD GW
001: MVLAELGGRI TRAIQQMNNV TIIDEKVLND FLNEITRALL QSDVSFGLVE KMQTNIKKIV NLDDLAAGHN KRLIIEQAIF KELCRMLDPG KPAFAPKKAK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK
101: PSVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KAALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDRFK KEKCDLIIVD TSGRHKQAAS
201: LFEEMRQVAE ATEPDLVIFV MDSSIGQAAF EQAEAFKETV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGKGDW
301: SGLVDKLQEV VPKDLQNELV ENLSQGNFTL RSMYDQFQCS LRIPLNQLFS MLPGISAEMM PKGHGEESRV KMKRYMTMMD SMTNKELDSP NPKIFNESRI
401: MRIARGSGRL VREVMEMLEE YKRIAKTMKG IKIPKNGDMS KVIPPQMLKQ MGGMSGLQSL MKQMGSAKDM MGMFGGGGK
Arabidopsis Description
SRP-54ASignal recognition particle 54 kDa protein [Source:UniProtKB/TrEMBL;Acc:Q56XJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.