CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012652_P003	Maize	extracellular	98.79	98.0
Zm00001d043303_P001	Maize	cytosol	96.77	97.17
Os01t0772800-01	Rice	plasma membrane	96.57	96.57
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	90.93	91.11
KRH44479	Soybean	cytosol	90.73	90.91
KRH09713	Soybean	cytosol	90.52	89.98
KRH23593	Soybean	cytosol	90.32	89.6
Solyc12g042740.1.1	Tomato	cytosol	90.12	89.58
VIT_09s0002g07290.t01	Wine grape	cytosol	88.91	89.09
PGSC0003DMT400073698	Potato	cytosol	88.91	88.38
PGSC0003DMT400001674	Potato	cytosol	86.69	86.52
CDY16472	Canola	cytosol	68.35	86.48
AT1G48900.1	Thale cress	cytosol	84.88	85.05
CDY40616	Canola	cytosol	83.27	83.43
CDX93702	Canola	cytosol	83.27	83.43
Bra018760.1-P	Field mustard	cytosol	83.27	83.43
Bra014161.1-P	Field mustard	cytosol	83.27	83.27
CDX77276	Canola	cytosol	83.06	83.06
HORVU3Hr1G075590.1	Barley	cytosol	31.65	81.77
HORVU6Hr1G029680.1	Barley	cytosol	31.05	80.21
HORVU5Hr1G019120.2	Barley	cytosol	31.05	80.21
HORVU7Hr1G036330.1	Barley	cytosol	38.91	80.08
AT1G15310.1	Thale cress	cytosol	76.81	79.54
TraesCS3D01G308700.1	Wheat	cytosol, mitochondrion	77.42	79.34
HORVU2Hr1G097520.1	Barley	cytosol	35.48	79.28
HORVU2Hr1G125480.2	Barley	cytosol	31.45	79.19
TraesCS3A01G322800.1	Wheat	mitochondrion	76.81	78.72
TraesCS3B01G342900.1	Wheat	cytosol	76.41	78.31
AT5G49500.1	Thale cress	cytosol	76.41	76.26
EES19782	Sorghum	cytosol	73.99	76.14
Bra026145.1-P	Field mustard	cytosol	73.39	75.99
CDY36546	Canola	cytosol	73.39	75.99
CDY39632	Canola	cytosol	73.39	75.83
Solyc03g116810.2.1	Tomato	nucleus	86.69	72.88
CDY10656	Canola	cytosol	27.22	68.88
KXG37972	Sorghum	cytosol	61.9	68.83
KXG37974	Sorghum	cytosol	61.9	68.83
GSMUA_Achr9P25680_001	Banana	cytosol	53.63	61.01
KXG34125	Sorghum	cytosol	59.88	59.76
CDY46694	Canola	cytosol	27.02	43.23
CDY17067	Canola	cytosol, nucleus	28.02	43.03
AT5G66970.1	Thale cress	cytosol	14.31	40.57
Bra014039.1-P	Field mustard	cytosol	33.06	39.9
EES04254	Sorghum	plastid	17.74	24.04
EES16662	Sorghum	plastid	27.02	23.97
KXG27759	Sorghum	plastid	26.41	23.77
EES17686	Sorghum	endoplasmic reticulum, extracellular	16.73	14.12
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.14	13.62

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.3.1.1.5	Gene3D:3.40.50.300	EntrezGene:8072140	InterPro:AAA+_ATPase
UniProt:C5XLK5	EnsemblPlants:EES01544	ProteinID:EES01544	ProteinID:EES01544.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787	GO:GO:0030529	GO:GO:0045047
GO:GO:0048500	InterPro:IPR036891	HAMAP:MF_00306	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881
PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF5	SMART:SM00382	SMART:SM00962
SMART:SM00963	EnsemblPlantsGene:SORBI_3003G312200	InterPro:SRP/SRP_N	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP54_euk
SUPFAM:SSF47364	SUPFAM:SSF47446	SUPFAM:SSF52540	unigene:Sbi.7823	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR01425	UniParc:UPI0001A84397	RefSeq:XP_002456424.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:64051363..64055445

Molecular Weight (calculated)

54811.4 Da

IEP (calculated)

9.843

GRAVY (calculated)

-0.228

Length

496 amino acids

Sequence
(BLAST)

001: MVLAQLGGSI SRALAQMSNA TVIDEKVLND CLNEISRALL QADVQFKMVR DMQANIKRIV NLEALAAGTN KRRIMQQAVF TELCNMLDPG KPSFTPKKGK
101: PSVVMFVGLQ GSGKTTTCTK YAYYHQRKGF KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYMESDPVK IAVEGVERFK KENCDLIIVD TSGRHKQEAA
201: LFEEMRQVSE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV SVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHID EFEVFDVKPF VSRLLGMGDW
301: SGFMDKIHEV VPTDQQPELL QKLSEGSFTL RLMYEQFQNI LKMGPIGQVF SMLPGFSAEL MPKGHEKESQ AKIKRYMTMM DSMTEAELDS TNPKLMTESR
401: IIRIARGSGR PVRDVMDMLE EYKRLAKIWG KMKGLKIPKK GEMSALSRNM NVQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSKEMSGMFG GMGGER

Best Arabidopsis Sequence Match ( AT1G48900.1 )
(BLAST)

001: MVLAELGGRI TRAIQQMSNV TIIDEKALNE CLNEITRALL QSDVSFPLVK EMQSNIKKIV NLEDLAAGHN KRRIIEQAIF SELCKMLDPG KPAFAPKKAK
101: ASVVMFVGLQ GAGKTTTCTK YAYYHQKKGY KPALVCADTF RAGAFDQLKQ NATKAKIPFY GSYTESDPVK IAVEGVDTFK KENCDLIIVD TSGRHKQEAS
201: LFEEMRQVAE ATKPDLVIFV MDSSIGQAAF DQAQAFKQSV AVGAVIITKM DGHAKGGGAL SAVAATKSPV IFIGTGEHMD EFEVFDVKPF VSRLLGMGDW
301: SGFVDKLQEV VPKDQQPELL EKLSQGNFTL RIMYDQFQNI LNMGPLKEVF SMLPGISAEM MPKGHEKESQ AKIKRYMTMM DSMTNDELDS SNPKVFNESR
401: MMRIARGSGR QVREVMEMLE EYKRLAKIWS KMKGLKIPKN GDMSALSRNM NAQHMSKVLP PQMLKQIGGM GGLQSLMKQM GSGKDMMGMF GGGDK

Arabidopsis Description

SRP-54CSignal recognition particle 54 kDa protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P49967]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.