CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU93303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	OQU93303	AT2G47450.1	11306572
AT5G03940.1	OQU93303	AT2G47450.1	14517205
AT5G03940.1	OQU93303	AT2G47450.1	15292240
AT5G03940.1	OQU93303	AT2G47450.1	15632183
AT5G03940.1	OQU93303	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052556_P001	Maize	plastid	93.47	94.5
Os11t0153600-01	Rice	cytosol	34.66	87.21
TraesCS4D01G115500.1	Wheat	plastid	84.57	84.12
TraesCS4A01G197700.1	Wheat	plastid	84.39	83.94
TraesCS4B01G117800.1	Wheat	plastid	84.03	83.57
HORVU4Hr1G021960.1	Barley	plastid	81.67	80.21
EES16662	Sorghum	plastid	77.31	76.21
Os11t0153700-01	Rice	plastid	76.59	75.76
KRH67940	Soybean	plastid	70.96	69.2
GSMUA_Achr10P...	Banana	plastid	71.69	68.7
VIT_08s0007g03160.t01	Wine grape	plastid	70.05	68.08
Bra009499.1-P	Field mustard	plastid	68.78	66.96
CDX70273	Canola	plastid	68.6	66.78
CDY41424	Canola	plastid	68.42	66.73
AT5G03940.1	Thale cress	plastid	68.24	66.67
PGSC0003DMT400022884	Potato	plastid	67.51	66.55
Solyc09g009940.2.1	Tomato	plastid	68.06	66.14
CDY04905	Canola	plastid	65.15	63.65
Bra028809.1-P	Field mustard	plastid	65.15	63.65
CDY14166	Canola	plastid	64.97	63.48
CDY14165	Canola	plastid	21.96	53.78
KXG37974	Sorghum	cytosol	21.96	27.13
KXG37972	Sorghum	cytosol	21.6	26.68
EES01544	Sorghum	cytosol	23.77	26.41
KXG34125	Sorghum	cytosol	22.87	25.35
EES04254	Sorghum	plastid	16.52	24.86
EES19782	Sorghum	cytosol	21.6	24.69
EES17686	Sorghum	endoplasmic reticulum, extracellular	16.7	15.65
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.24	15.22
Os11t0153800-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	UniProt:A0A1B6PQ07	InterPro:AAA+_ATPase
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016787
GO:GO:0048500	InterPro:IPR036891	EnsemblPlants:KXG27759	ProteinID:KXG27759	ProteinID:KXG27759.1	HAMAP:MF_00306
InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564
PANTHER:PTHR11564:SF19	SMART:SM00382	SMART:SM00962	SMART:SM00963	EnsemblPlantsGene:SORBI_3005G039500	InterPro:SRP54
InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh	SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx
InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959	UniParc:UPI0003C69DF2	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:3607320..3611734

Molecular Weight (calculated)

60231.6 Da

IEP (calculated)

10.213

GRAVY (calculated)

-0.205

Length

551 amino acids

Sequence
(BLAST)

001: MEATAPALSL SLALHSSPAV ARRSAGKPIF AYLHRGGPST ASSVHLRASR TPASSPVWRR RRRGSGLVVR AEMFGQLTTG LESAWNKLRG VDVLTKENIA
101: EPMRDIRRAL LEADVSLPVV RRFVSSVSDK ALGANAIRGV RPDQQLVKIV HDELVQLMGG EVSDLVFSKS GPTVILLAGL QGVGKTTVCA KLAFYLKKLG
201: KSCMLVAADV YRPAAIDQLT ILGKQVGVPV YSEGTEAKPT QITKNAMEEA KSKNIDAIVV DTAGRLQIDK SMMDELKEVK KAVNPTEVLL VVDAMTGQEA
301: AALVTTFNIE IGITGAILTK LDGDSRGGAA LSVKEVSGKP IKFVGRGERL EDLELFYPDR MAQRVLGMGD VLSFVEKTQE VMRQEEAVEL QKKIMSAKFD
401: FNDFLKQSQN VAKMGSMSRI IGMMPGMNKI TPAQIREAEK RLAFVESMIN AMTAEEREKP ELLAESRERR IRVAEESGKT EQEVSQLVAQ LFQMRAQMQK
501: LMSMVQGQDA IAGMGDLMDS LKAEEKAPPG TARRRRRNSK PKQRELDAVL S

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.