Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid, endoplasmic reticulum, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 3
- extracellular 1
- golgi 1
- plasma membrane 1
- vacuole 1
- cytosol 2
- mitochondrion 3
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d027293_P004 | Maize | cytosol, endoplasmic reticulum, mitochondrion, plastid | 96.15 | 95.09 |
GSMUA_Achr5P20650_001 | Banana | cytosol | 48.4 | 89.61 |
GSMUA_Achr11P... | Banana | endoplasmic reticulum | 71.63 | 79.4 |
TraesCS5A01G534900.1 | Wheat | golgi | 81.25 | 78.97 |
TraesCS4D01G360300.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 81.25 | 78.48 |
TraesCS4B01G367200.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, plastid | 81.09 | 78.45 |
GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 56.41 | 73.95 |
VIT_11s0037g00300.t01 | Wine grape | endoplasmic reticulum | 72.92 | 73.86 |
PGSC0003DMT400020462 | Potato | endoplasmic reticulum, extracellular | 71.31 | 71.89 |
Solyc12g009990.1.1 | Tomato | endoplasmic reticulum, extracellular | 71.15 | 71.73 |
KRH54944 | Soybean | endoplasmic reticulum | 70.99 | 71.11 |
Bra024060.1-P | Field mustard | cytosol, endoplasmic reticulum | 68.91 | 70.03 |
CDX72255 | Canola | cytosol, endoplasmic reticulum | 68.91 | 69.81 |
AT4G30600.1 | Thale cress | endoplasmic reticulum | 70.83 | 69.72 |
KRH03040 | Soybean | endoplasmic reticulum | 69.87 | 69.65 |
CDY28196 | Canola | endoplasmic reticulum | 69.39 | 69.61 |
Bra011203.1-P | Field mustard | endoplasmic reticulum | 69.39 | 69.61 |
CDY39221 | Canola | cytosol, endoplasmic reticulum | 68.59 | 69.59 |
CDX68673 | Canola | extracellular | 69.71 | 69.27 |
EES17686 | Sorghum | endoplasmic reticulum, extracellular | 64.26 | 68.2 |
KRH72313 | Soybean | cytosol | 32.85 | 66.56 |
Bra014811.1-P | Field mustard | cytosol, endoplasmic reticulum | 55.29 | 65.46 |
EES04254 | Sorghum | plastid | 15.54 | 26.5 |
KXG37974 | Sorghum | cytosol | 13.78 | 19.28 |
KXG37972 | Sorghum | cytosol | 13.62 | 19.06 |
EES16662 | Sorghum | plastid | 16.99 | 18.96 |
KXG34125 | Sorghum | cytosol | 14.1 | 17.71 |
EES19782 | Sorghum | cytosol | 13.46 | 17.43 |
KXG27759 | Sorghum | plastid | 15.22 | 17.24 |
EES01544 | Sorghum | cytosol | 13.62 | 17.14 |
Protein Annotations
Gene3D:1.20.120.140 | MapMan:23.3.1.2.1 | Gene3D:3.30.450.60 | Gene3D:3.40.50.300 | EntrezGene:8059526 | InterPro:AAA+_ATPase |
UniProt:C5WMT6 | ncoils:Coil | EnsemblPlants:EER93028 | ProteinID:EER93028 | ProteinID:EER93028.1 | GO:GO:0000166 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005047 | GO:GO:0005488 | GO:GO:0005525 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005785 |
GO:GO:0006614 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
GO:GO:0016787 | InterPro:Longin-like_dom_sf | InterPro:P-loop_NTPase | PFAM:PF00448 | PFAM:PF02881 | PFAM:PF04086 |
ScanProsite:PS00300 | PANTHER:PTHR43134 | PANTHER:PTHR43134:SF4 | SMART:SM00382 | SMART:SM00962 | SMART:SM00963 |
EnsemblPlantsGene:SORBI_3001G541100 | InterPro:SRP/SRP_N | InterPro:SRP54_GTPase_dom | SUPFAM:SSF47364 | SUPFAM:SSF52540 | SUPFAM:SSF64356 |
unigene:Sbi.3533 | InterPro:Sig_recog_particle_rcpt_asu_N | InterPro:Signal_recog_particl_SRP54_hlx | UniParc:UPI0001A82739 | RefSeq:XP_002466030.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:80382343..80387475
Molecular Weight (calculated)
68446.6 Da
IEP (calculated)
8.618
GRAVY (calculated)
-0.433
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEELLIFTR GGLILWSSCR ALGAAALKGS PIDALIRSCL LEERSADASF SQDNYALKWT FHNDLGLVFV AVYQKILHLL YVDDLLAAVR REFSQIYDPK
101: RTSYDDFGDI FRQLHREAEA RAEEMKKSKQ ALSSRPQPAL SQKKVGPKGR RGDSHGAAAN KGGSGAKDDS DGDDSGNKDQ NTLVNGAFKG QENGVRKENS
201: LARPVVVKGK ENGGPKDNGA FDVSKLQKLR TNKKNVAADN GTKKLTKPDT KKKGKQDRVW DDKPSNKKLD FTDPADERGD EVTDNVAVIE GESMMDKDED
301: LSSDSEDEEV EDGPKKKGWF SSMFQSIAGN NVLEKSDLQP ALKALKDRLM AKNVAEEIAE KLCESVAASL EGKKLGSFTR ISSTVQTAME DALLRILTPR
401: RSIDILRDVH AAKERGRPYV IVFVGVNGVG KSTNLAKVAY WLLQHNLSVT LAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAR EAIQEATRNK
501: SDVVLVDTAG RMQDNEPLMR ALSKLINLNS PDLVLFVGEA LVGNDAVDQL TKFNQKLADL SAVPTARLID GILLTKFDTI DDKVGAALSM VYISGAPVMF
601: VGCGQSYTDL KKLNVKSIVK TLLK
101: RTSYDDFGDI FRQLHREAEA RAEEMKKSKQ ALSSRPQPAL SQKKVGPKGR RGDSHGAAAN KGGSGAKDDS DGDDSGNKDQ NTLVNGAFKG QENGVRKENS
201: LARPVVVKGK ENGGPKDNGA FDVSKLQKLR TNKKNVAADN GTKKLTKPDT KKKGKQDRVW DDKPSNKKLD FTDPADERGD EVTDNVAVIE GESMMDKDED
301: LSSDSEDEEV EDGPKKKGWF SSMFQSIAGN NVLEKSDLQP ALKALKDRLM AKNVAEEIAE KLCESVAASL EGKKLGSFTR ISSTVQTAME DALLRILTPR
401: RSIDILRDVH AAKERGRPYV IVFVGVNGVG KSTNLAKVAY WLLQHNLSVT LAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAR EAIQEATRNK
501: SDVVLVDTAG RMQDNEPLMR ALSKLINLNS PDLVLFVGEA LVGNDAVDQL TKFNQKLADL SAVPTARLID GILLTKFDTI DDKVGAALSM VYISGAPVMF
601: VGCGQSYTDL KKLNVKSIVK TLLK
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Arabidopsis Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.