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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plastid, endoplasmic reticulum, mitochondrion

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 3
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • vacuole 1
  • cytosol 2
  • mitochondrion 3
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027293_P004 Maize cytosol, endoplasmic reticulum, mitochondrion, plastid 96.15 95.09
GSMUA_Achr5P20650_001 Banana cytosol 48.4 89.61
GSMUA_Achr11P... Banana endoplasmic reticulum 71.63 79.4
TraesCS5A01G534900.1 Wheat golgi 81.25 78.97
TraesCS4D01G360300.1 Wheat cytosol, golgi, mitochondrion, plastid 81.25 78.48
TraesCS4B01G367200.1 Wheat cytosol, endoplasmic reticulum, mitochondrion, plastid 81.09 78.45
GSMUA_Achr11P... Banana cytosol, mitochondrion 56.41 73.95
VIT_11s0037g00300.t01 Wine grape endoplasmic reticulum 72.92 73.86
PGSC0003DMT400020462 Potato endoplasmic reticulum, extracellular 71.31 71.89
Solyc12g009990.1.1 Tomato endoplasmic reticulum, extracellular 71.15 71.73
KRH54944 Soybean endoplasmic reticulum 70.99 71.11
Bra024060.1-P Field mustard cytosol, endoplasmic reticulum 68.91 70.03
CDX72255 Canola cytosol, endoplasmic reticulum 68.91 69.81
AT4G30600.1 Thale cress endoplasmic reticulum 70.83 69.72
KRH03040 Soybean endoplasmic reticulum 69.87 69.65
CDY28196 Canola endoplasmic reticulum 69.39 69.61
Bra011203.1-P Field mustard endoplasmic reticulum 69.39 69.61
CDY39221 Canola cytosol, endoplasmic reticulum 68.59 69.59
CDX68673 Canola extracellular 69.71 69.27
EES17686 Sorghum endoplasmic reticulum, extracellular 64.26 68.2
KRH72313 Soybean cytosol 32.85 66.56
Bra014811.1-P Field mustard cytosol, endoplasmic reticulum 55.29 65.46
EES04254 Sorghum plastid 15.54 26.5
KXG37974 Sorghum cytosol 13.78 19.28
KXG37972 Sorghum cytosol 13.62 19.06
EES16662 Sorghum plastid 16.99 18.96
KXG34125 Sorghum cytosol 14.1 17.71
EES19782 Sorghum cytosol 13.46 17.43
KXG27759 Sorghum plastid 15.22 17.24
EES01544 Sorghum cytosol 13.62 17.14
Protein Annotations
Gene3D:1.20.120.140MapMan:23.3.1.2.1Gene3D:3.30.450.60Gene3D:3.40.50.300EntrezGene:8059526InterPro:AAA+_ATPase
UniProt:C5WMT6ncoils:CoilEnsemblPlants:EER93028ProteinID:EER93028ProteinID:EER93028.1GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005047GO:GO:0005488GO:GO:0005525
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005785
GO:GO:0006614GO:GO:0006810GO:GO:0006886GO:GO:0008150GO:GO:0016020GO:GO:0016192
GO:GO:0016787InterPro:Longin-like_dom_sfInterPro:P-loop_NTPasePFAM:PF00448PFAM:PF02881PFAM:PF04086
ScanProsite:PS00300PANTHER:PTHR43134PANTHER:PTHR43134:SF4SMART:SM00382SMART:SM00962SMART:SM00963
EnsemblPlantsGene:SORBI_3001G541100InterPro:SRP/SRP_NInterPro:SRP54_GTPase_domSUPFAM:SSF47364SUPFAM:SSF52540SUPFAM:SSF64356
unigene:Sbi.3533InterPro:Sig_recog_particle_rcpt_asu_NInterPro:Signal_recog_particl_SRP54_hlxUniParc:UPI0001A82739RefSeq:XP_002466030.1SEG:seg
Description
hypothetical protein
Coordinates
chr1:+:80382343..80387475
Molecular Weight (calculated)
68446.6 Da
IEP (calculated)
8.618
GRAVY (calculated)
-0.433
Length
624 amino acids
Sequence
(BLAST)
001: MLEELLIFTR GGLILWSSCR ALGAAALKGS PIDALIRSCL LEERSADASF SQDNYALKWT FHNDLGLVFV AVYQKILHLL YVDDLLAAVR REFSQIYDPK
101: RTSYDDFGDI FRQLHREAEA RAEEMKKSKQ ALSSRPQPAL SQKKVGPKGR RGDSHGAAAN KGGSGAKDDS DGDDSGNKDQ NTLVNGAFKG QENGVRKENS
201: LARPVVVKGK ENGGPKDNGA FDVSKLQKLR TNKKNVAADN GTKKLTKPDT KKKGKQDRVW DDKPSNKKLD FTDPADERGD EVTDNVAVIE GESMMDKDED
301: LSSDSEDEEV EDGPKKKGWF SSMFQSIAGN NVLEKSDLQP ALKALKDRLM AKNVAEEIAE KLCESVAASL EGKKLGSFTR ISSTVQTAME DALLRILTPR
401: RSIDILRDVH AAKERGRPYV IVFVGVNGVG KSTNLAKVAY WLLQHNLSVT LAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAR EAIQEATRNK
501: SDVVLVDTAG RMQDNEPLMR ALSKLINLNS PDLVLFVGEA LVGNDAVDQL TKFNQKLADL SAVPTARLID GILLTKFDTI DDKVGAALSM VYISGAPVMF
601: VGCGQSYTDL KKLNVKSIVK TLLK
Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)
001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK
Arabidopsis Description
AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.