CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
endoplasmic reticulum 3
mitochondrion 3
extracellular 1
golgi 1
plasma membrane 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20650_001	Banana	cytosol	47.35	87.54
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	82.83	83.77
GSMUA_Achr11P...	Banana	endoplasmic reticulum	71.43	79.04
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	78.49	79.0
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	78.33	78.84
KRH03040	Soybean	endoplasmic reticulum	78.81	78.43
AT4G30600.1	Thale cress	endoplasmic reticulum	79.13	77.76
CDX72255	Canola	cytosol, endoplasmic reticulum	75.6	76.46
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	75.28	76.38
CDY39221	Canola	cytosol, endoplasmic reticulum	75.12	76.1
Bra011203.1-P	Field mustard	endoplasmic reticulum	75.44	75.56
CDY28196	Canola	endoplasmic reticulum	75.44	75.56
CDX68673	Canola	extracellular	75.92	75.32
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	56.18	73.53
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	61.48	72.68
KRH72313	Soybean	cytosol	35.79	72.4
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	71.11	70.99
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	72.55	70.08
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	72.55	69.97
TraesCS5A01G534900.1	Wheat	golgi	72.07	69.94
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	70.79	69.89
TraesCS6D01G089600.1	Wheat	endoplasmic reticulum	61.96	63.7
TraesCS6A01G101200.1	Wheat	endoplasmic reticulum	62.28	63.4
TraesCS6B01G129300.1	Wheat	endoplasmic reticulum	61.32	62.83
EES17686	Sorghum	endoplasmic reticulum, extracellular	59.23	62.76
HORVU6Hr1G018280.1	Barley	cytosol, endoplasmic reticulum	62.28	61.3
KRH48224	Soybean	plastid	16.37	27.42
KRH65131	Soybean	plastid	16.21	27.15
KRH09713	Soybean	cytosol	13.96	17.43
KRH44479	Soybean	cytosol	13.8	17.37
KRH23593	Soybean	cytosol	13.8	17.2
KRH47429	Soybean	cytosol, endoplasmic reticulum, nucleus	13.64	17.17
KRH67940	Soybean	plastid	15.41	16.99

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:100805636	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02003631	EnsemblPlantsGene:GLYMA_06G220500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	UniProt:I1KDE5	EnsemblPlants:KRH54944
ProteinID:KRH54944	ProteinID:KRH54944.1	InterPro:Longin-like_dom_sf	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF02881
PFAM:PF04086	ScanProsite:PS00300	PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962
SMART:SM00963	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom	SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356
InterPro:Sig_recog_particle_rcpt_asu_N	InterPro:Signal_recog_particl_SRP54_hlx	UniParc:UPI0002339A46	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:26235784..26247218

Molecular Weight (calculated)

68615.9 Da

IEP (calculated)

7.919

GRAVY (calculated)

-0.429

Length

623 amino acids

Sequence
(BLAST)

001: MLEQLLIFTR GGLILWTCKE LGNALKGSPI DTLIRSCLLE ERSGAAAYNY DAPGASYTLK WTFHNDLGLV FVAVYQRILH LLYVEDLLAM VKREFSQVYD
101: PKTTAYPDFD ETFRQLKMEA LARTEDLKRS NSNPVAGNAK KQVQGNDKSG FEGGNKKKKS GGGADGDDGK RKLENGHSNG NFLVAKDTNL SRDVNGRHNG
201: SPNVGAFDVH KLQKLRTKGG KKTDTVVAKA SKAEPNKKVT KKNRVWDEAA TTETKLDFTD HSGEDGERNI DFVVAADQGE SMMDKEEIVS SESEQEEEDE
301: DEEDAGKNRK PDAKSKGWFS SMFQSIAGKA NLEKSDLEPA LKALKDRLMT KNVAEEIAEK LCESVAASLE GKKLASFTRI SSTVHAAMEE ALIRILTPRR
401: SIDILRDVHA AKEQRKPYVV VFVGVNGVGK STNLAKVAYW LLQHKVSVMM AACDTFRSGA VEQLRTHARR LQIPIFEKGY EKDPAVVAKE AIQEASRNGS
501: DVVLVDTAGR MQDNEPLMRA LSKLIYLNNP DLVLFVGEAL VGNDAVDQLS KFNQKLADLA TSPNPRLIDG ILLTKFDTID DKVGAALSMV YISGAPVMFV
601: GCGQSYTDLK KLNVKSIVKT LLK

Best Arabidopsis Sequence Match ( AT4G30600.2 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.