Factsheet for Zm00001d027293_P004

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93028	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	95.09	96.15
GSMUA_Achr5P20650_001	Banana	cytosol	48.02	89.91
GSMUA_Achr11P...	Banana	endoplasmic reticulum	70.05	78.51
TraesCS5A01G534900.1	Wheat	golgi	79.87	78.5
TraesCS4D01G360300.1	Wheat	cytosol, golgi, mitochondrion, plastid	79.87	78.02
TraesCS4B01G367200.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, plastid	79.71	77.98
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	55.94	74.16
VIT_11s0037g00300.t01	Wine grape	endoplasmic reticulum	72.11	73.86
Solyc12g009990.1.1	Tomato	endoplasmic reticulum, extracellular	70.36	71.73
PGSC0003DMT400020462	Potato	endoplasmic reticulum, extracellular	70.36	71.73
KRH54944	Soybean	endoplasmic reticulum	69.89	70.79
Bra024060.1-P	Field mustard	cytosol, endoplasmic reticulum	67.99	69.87
KRH03040	Soybean	endoplasmic reticulum	69.26	69.81
Bra011203.1-P	Field mustard	endoplasmic reticulum	68.78	69.77
CDY28196	Canola	endoplasmic reticulum	68.78	69.77
CDX72255	Canola	cytosol, endoplasmic reticulum	67.99	69.64
CDY39221	Canola	cytosol, endoplasmic reticulum	67.83	69.59
AT4G30600.1	Thale cress	endoplasmic reticulum	69.73	69.4
CDX68673	Canola	extracellular	68.94	69.27
KRH72313	Soybean	cytosol	32.33	66.23
Bra014811.1-P	Field mustard	cytosol, endoplasmic reticulum	54.52	65.28
Zm00001d042044_P001	Maize	plastid	15.21	22.38
Zm00001d023431_P002	Maize	plastid	16.8	18.79
Zm00001d043303_P001	Maize	cytosol	13.79	17.61
Zm00001d038661_P001	Maize	cytosol	13.31	17.43
Zm00001d052556_P001	Maize	plastid	14.9	17.25
Zm00001d012652_P003	Maize	extracellular	13.63	17.2

Protein Annotations

Gene3D:1.20.120.140	EntrezGene:100191673	MapMan:23.3.1.2.1	Gene3D:3.30.450.60	Gene3D:3.40.50.300	UniProt:A0A1D6JK26
InterPro:AAA+_ATPase	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005047	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005785	GO:GO:0006614	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0016787	InterPro:Longin-like_dom_sf	ProteinID:ONL92609.1
ProteinID:ONL92611.1	ProteinID:ONL92613.1	InterPro:P-loop_NTPase	PFAM:PF00448	PFAM:PF04086	ScanProsite:PS00300
PANTHER:PTHR43134	PANTHER:PTHR43134:SF4	SMART:SM00382	SMART:SM00962	InterPro:SRP/SRP_N	InterPro:SRP54_GTPase_dom
SUPFAM:SSF47364	SUPFAM:SSF52540	SUPFAM:SSF64356	InterPro:Sig_recog_particle_rcpt_asu_N	UniParc:UPI000843398F	EnsemblPlantsGene:Zm00001d027293
EnsemblPlants:Zm00001d027293_P004	EnsemblPlants:Zm00001d027293_T004	SEG:seg	:	:	:

Description

signal recognition particle receptor homolog1 signal recognition particle protein subunit 9

Coordinates

chr1:-:2026825..2034154

Molecular Weight (calculated)

69152.5 Da

IEP (calculated)

8.795

GRAVY (calculated)

-0.450

Length

631 amino acids

Sequence
(BLAST)

001: MLEELLIFTR GGLILWSSCR ALGAAALKGS PIDALIRSCL LEERSADASF SQDNYALKWT FHNDLGLVFV AVYQKILHLL YVDDLLAAVR KEFSQIYDPK
101: RTSYDDFGDI FRQLHREAEA RTEEMKKSKQ ALSSRPQPAL TQKKPGPKGR GGDSRGGAAN KGGSGAKDDS DGDGYGNQDH RTLANGAFKG QENGVRKENS
201: SHGRTVVVKG KENGAPKDEG AFDVSKLQKL RANKKNGATD NGTKKLTKPD IKKKGKQDRV WDDKPSNKKL DFTDPADERG DEVADNVAVI EGESMMDKDE
301: DLSSDSEDEE VEDGPKKKGW FSSMFQSISG NNVLEKSDLQ PALKALKDRL MAKNVKASLM QAEEIAEKLC ESVAASLEGK KLGSFTRISS TVQTAMEDAL
401: LRILTPRRSI DILRDVHAAK ERGRPYVIVF VGVNGVGKST NLAKVAYWLL QHNLSVTLAA CDTFRSGAVE QLRTHARRLQ IPIFEKGYEK DPAVVAREAI
501: QEATRNKSDV VLVDTAGRMQ DNEPLMRALS KLINLNSPDL VLFVGEALVG NDAVDQLTKF NQKLADLSAV PTARLIDGIL LTKFDTIDDK VGAALSMVYI
601: SGAPVMFVGC GQSYTDLKKL NVKSIVKTLL K

Best Arabidopsis Sequence Match ( AT4G30600.1 )
(BLAST)

001: MLEQLLIFTR GGLILWTCKE IGNALKGSPI DTLIRSCLLE ERSGAVSFNY DAPGAAYTLK WTFHNDLGLV FVAVYQRILH LLYVDDLLSM VKQSFSEVYD
101: PKRMAYDDFD ETFRQLRIEA EARAEELRKT KQVGKPVTSV KKQGQVSKPG LEGGNKRVSS EGGSKKDDGD GGNKAKVSTL TNGHSNGNHQ MEDDSQETND
201: LANGKENTSS NVAVDLSKLQ KLRSKGVRGR GGVRKTDSIG NKSSKVAEPA KKATKKNRVW DDAAPKQSKL DFTDSIDENG NNDHVDIVAA DQGESMMDKE
301: EVFSSDSESE DDDEPGSDEK PAQAKKKGWF SSVFQSITGK ANLERTDLGP ALKALKERLM TKNVAEEIAE KLCESVEASL EGKKLSSFTR ISSTVQAAME
401: DALVRILTPR RSIDILRDVH AAKEQRKPYV VVFVGVNGVG KSTNLAKVAY WLQQHKVSVM MAACDTFRSG AVEQLRTHAR RLQIPIFEKG YEKDPAVVAK
501: EAIQEATRNG SDVVLVDTAG RMQDNEPLMR ALSKLINLNQ PDLVLFVGEA LVGNDAVDQL SKFNQKLSDL STSGNPRLID GILLTKFDTI DDKVGAALSM
601: VYISGSPVMF VGCGQSYTDL KKLNVKAIVK TLLK

Arabidopsis Description

AT4g30600/F17I23_60 [Source:UniProtKB/TrEMBL;Acc:Q9M0A0]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.