Factsheet for Zm00001d052556_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d027518_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	11306572
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	14517205
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	15292240
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	15632183
AT5G03940.1	Zm00001d027518_P001	AT2G47450.1	16678173

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27759	Sorghum	plastid	94.5	93.47
Os11t0153600-01	Rice	cytosol	34.5	85.84
TraesCS4D01G115500.1	Wheat	plastid	83.85	82.49
TraesCS4A01G197700.1	Wheat	plastid	83.67	82.31
TraesCS4B01G117800.1	Wheat	plastid	83.3	81.95
HORVU4Hr1G021960.1	Barley	plastid	80.73	78.43
Zm00001d023431_P002	Maize	plastid	77.25	74.65
Os11t0153700-01	Rice	plastid	75.78	74.15
KRH67940	Soybean	plastid	71.19	68.67
VIT_08s0007g03160.t01	Wine grape	plastid	70.83	68.08
GSMUA_Achr10P...	Banana	plastid	71.74	68.0
PGSC0003DMT400022884	Potato	plastid	68.44	66.73
Solyc09g009940.2.1	Tomato	plastid	68.81	66.14
AT5G03940.1	Thale cress	plastid	68.44	66.13
CDY41424	Canola	plastid	68.26	65.84
Bra009499.1-P	Field mustard	plastid	68.26	65.72
CDX70273	Canola	plastid	68.07	65.55
Bra028809.1-P	Field mustard	plastid	65.14	62.94
CDY14166	Canola	plastid	64.95	62.77
CDY04905	Canola	plastid	64.95	62.77
CDY14165	Canola	plastid	21.83	52.89
Zm00001d012652_P003	Maize	extracellular	24.59	26.8
Zm00001d043303_P001	Maize	cytosol	24.22	26.72
Zm00001d038661_P001	Maize	cytosol	21.83	24.69
Zm00001d042044_P001	Maize	plastid	16.33	20.75
Zm00001d027293_P004	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	17.25	14.9
Os11t0153800-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.260.30	Gene3D:1.20.120.140	EntrezGene:103654352	MapMan:23.1.7.3.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
ProteinID:AQK57419.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0016787	GO:GO:0048500	InterPro:IPR036891	UniProt:K7UMB3	HAMAP:MF_00306	InterPro:P-loop_NTPase
PFAM:PF00448	PFAM:PF02881	PFAM:PF02978	ScanProsite:PS00300	PANTHER:PTHR11564	PANTHER:PTHR11564:SF19
SMART:SM00382	SMART:SM00962	SMART:SM00963	InterPro:SRP54	InterPro:SRP54_GTPase_dom	InterPro:SRP_Ffh
SUPFAM:SSF47446	SUPFAM:SSF52540	InterPro:Signal_recog_part_SRP54_M_sf	InterPro:Signal_recog_particl_SRP54_hlx	InterPro:Signal_recog_particle_SRP54_M	TIGRFAMs:TIGR00959
UniParc:UPI00019AAA2B	EnsemblPlantsGene:Zm00001d052556	EnsemblPlants:Zm00001d052556_P001	EnsemblPlants:Zm00001d052556_T001	SEG:seg	:

Description

Signal recognition particle 54 kDa protein chloroplastic

Coordinates

chr4:-:192908263..192917762

Molecular Weight (calculated)

59741.0 Da

IEP (calculated)

10.236

GRAVY (calculated)

-0.232

Length

545 amino acids

Sequence
(BLAST)

001: MEATALASHS SPFAVHRSTG KPAFAYPHRG GPSMVSSVHL RTSRTPARSA AWRRRRRGTG LVVRAEMFGQ LTTGLESAWN KLRGVGVLTK ENIAEPMRDI
101: RRALLEADVS LPVVRRFVSS VSDKALGANA IRGVRPDQQL VKIVHDELVQ LMGGEVSDIV FAKSGPTVIL LAGLQGVGKT TVCAKLAFYL KKLGKSCMLV
201: AADIYRPAAI DQLTILGKQV GVPVYSEGTE AKPTQITKNA MEEAKSKNID AIVVDTAGRL QIDRSMMDEL KEVKKAVNPT EVLLVVDAMT GQEAAALVTT
301: FNIEIGITGA ILTKLDGDSR GGAALSVKEV SGRPIKFVGR GERLEDLELF YPDRMAQRVL GMGDVLSFVE KTQEVMRQEE AIELQKKIMS AKFDFNDFLK
401: QSQNVAKMGS MSRIIGMMPG MNKITPAQIR EAEKRLAFVE SMINAMTAEE REKPELLAES RERRIRVAEE SGKTEQEVSQ LVAQLFQMRA QMQKLMGMVQ
501: GQEAIAGMGD LMDSLKSEEK APPGTARRKR RNNTSKQRDL DAVLS

Best Arabidopsis Sequence Match ( AT5G03940.1 )
(BLAST)

001: MEALQFSSVN RVPCTLSCTG NRRIKAAFSS AFTGGTINSA SLSSSRNLST REIWSWVKSK TVVGHGRYRR SQVRAEMFGQ LTGGLEAAWS KLKGEEVLTK
101: DNIAEPMRDI RRALLEADVS LPVVRRFVQS VSDQAVGMGV IRGVKPDQQL VKIVHDELVK LMGGEVSELQ FAKSGPTVIL LAGLQGVGKT TVCAKLACYL
201: KKQGKSCMLI AGDVYRPAAI DQLVILGEQV GVPVYTAGTD VKPADIAKQG LKEAKKNNVD VVIMDTAGRL QIDKGMMDEL KDVKKFLNPT EVLLVVDAMT
301: GQEAAALVTT FNVEIGITGA ILTKLDGDSR GGAALSVKEV SGKPIKLVGR GERMEDLEPF YPDRMAGRIL GMGDVLSFVE KATEVMRQED AEDLQKKIMS
401: AKFDFNDFLK QTRAVAKMGS MTRVLGMIPG MGKVSPAQIR EAEKNLLVME AMIEVMTPEE RERPELLAES PERRKRIAKD SGKTEQQVSA LVAQIFQMRV
501: KMKNLMGVME GGSIPALSGL EDALKAEQKA PPGTARRKRK ADSRKKFVES ASSKPGPRGF GSGN

Arabidopsis Description

FFCSRP54CP [Source:UniProtKB/TrEMBL;Acc:A0A178UD49]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.